RNA id: TU84528


Basic Information

Item Value
RNA id TU84528
length 201
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G67684
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 801264 ~ 801464 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cctggaacagaggagactacgtggggacttgatccaagtcttcaaaatcatgaaaggcatcgaccacatcaaaccagaggagcttttccagatcagcagggacacacagacccggggacacaaatggaaattgggcttcaaggcattcaagacagaaaacaggagacacttcttcacacagagaggcgtcacaatctgaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84405 lncRNA upstream 480943 169904 ~ 320321 (+) True G67587
TU84399 lncRNA upstream 554262 147188 ~ 247002 (+) False AMCG00014061
TU84529 lncRNA downstream 3073 804537 ~ 804746 (+) True G67685
TU84535 lncRNA downstream 180375 981839 ~ 1022813 (+) True G67690
TU84543 lncRNA downstream 448635 1250099 ~ 1250314 (+) True G67698
TU84544 lncRNA downstream 474527 1275991 ~ 1276216 (+) True G67699
TU84655 lncRNA downstream 1019109 1820573 ~ 1821758 (+) True G67792
AMCG00014071 mRNA upstream 415161 379210 ~ 386103 (+) True AMCG00014071
AMCG00014069 mRNA upstream 452089 279130 ~ 349175 (+) True AMCG00014069
AMCG00014068 mRNA upstream 543604 252275 ~ 257660 (+) True AMCG00014068
AMCG00014066 mRNA upstream 560136 230578 ~ 241128 (+) True AMCG00014066
AMCG00014061 mRNA upstream 638854 136864 ~ 162410 (+) True AMCG00014061
AMCG00014077 mRNA downstream 386095 1187559 ~ 1188536 (+) True AMCG00014077
AMCG00014083 mRNA downstream 433228 1234692 ~ 1244467 (+) True AMCG00014083
AMCG00014079 mRNA downstream 443007 1244471 ~ 1245448 (+) True AMCG00014079
AMCG00014078 mRNA downstream 483466 1284930 ~ 1285907 (+) True AMCG00014078
AMCG00014085 mRNA downstream 503580 1305044 ~ 1306528 (+) True AMCG00014085
TU84388 other upstream 694142 58449 ~ 107122 (+) True G67577
TU84560 other downstream 682321 1483785 ~ 1484093 (+) False AMCG00014099
TU84663 other downstream 1033968 1835432 ~ 1838125 (+) True AMCG00014104
TU84672 other downstream 1077627 1879091 ~ 1881041 (+) True G67801
TU84682 other downstream 1098756 1900220 ~ 1902615 (+) True AMCG00014111
TU84815 other downstream 1325408 2126872 ~ 2130145 (+) True G67896

Expression Profile