RNA id: TU84535


Basic Information

Item Value
RNA id TU84535
length 344
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G67690
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 981839 ~ 1022813 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gccatttgtcccattgtgctcatttggtgtccattaataactaagtgatccaaggatcctatccagtctgtttttgaatgttcccaaactttcagcttctaccacatcgctggggagtttgttcagattgtgacgcctctctgtgtgaagaagtgtctcctgttttctgtcttgaatgccttgaagcccaatttccatttgtgtccccgggtgcgtgtgtccctgctgatctggaaaagctcctctggtttgatgtggtcgatgcctttcatgattttgaagacttggatcaagtccccacatagtctcctctgttccagggtgaaaaggttcagttccctcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84529 lncRNA upstream 177093 804537 ~ 804746 (+) True G67685
TU84528 lncRNA upstream 180375 801264 ~ 801464 (+) True G67684
TU84405 lncRNA upstream 661518 169904 ~ 320321 (+) True G67587
TU84399 lncRNA upstream 734837 147188 ~ 247002 (+) False AMCG00014061
TU84543 lncRNA downstream 227286 1250099 ~ 1250314 (+) True G67698
TU84544 lncRNA downstream 253178 1275991 ~ 1276216 (+) True G67699
TU84655 lncRNA downstream 797760 1820573 ~ 1821758 (+) True G67792
TU84650 lncRNA downstream 817352 1840165 ~ 1842445 (+) True G67789
TU84797 lncRNA downstream 1054490 2077303 ~ 2077602 (+) True G67882
AMCG00014071 mRNA upstream 595736 379210 ~ 386103 (+) True AMCG00014071
AMCG00014069 mRNA upstream 632664 279130 ~ 349175 (+) True AMCG00014069
AMCG00014068 mRNA upstream 724179 252275 ~ 257660 (+) True AMCG00014068
AMCG00014066 mRNA upstream 740711 230578 ~ 241128 (+) True AMCG00014066
AMCG00014061 mRNA upstream 819429 136864 ~ 162410 (+) True AMCG00014061
AMCG00014077 mRNA downstream 164746 1187559 ~ 1188536 (+) True AMCG00014077
AMCG00014083 mRNA downstream 211879 1234692 ~ 1244467 (+) True AMCG00014083
AMCG00014079 mRNA downstream 221658 1244471 ~ 1245448 (+) True AMCG00014079
AMCG00014078 mRNA downstream 262117 1284930 ~ 1285907 (+) True AMCG00014078
AMCG00014085 mRNA downstream 282231 1305044 ~ 1306528 (+) True AMCG00014085
TU84388 other upstream 874717 58449 ~ 107122 (+) True G67577
TU84560 other downstream 460972 1483785 ~ 1484093 (+) False AMCG00014099
TU84663 other downstream 812619 1835432 ~ 1838125 (+) True AMCG00014104
TU84672 other downstream 856278 1879091 ~ 1881041 (+) True G67801
TU84682 other downstream 877407 1900220 ~ 1902615 (+) True AMCG00014111
TU84815 other downstream 1104059 2126872 ~ 2130145 (+) True G67896

Expression Profile