RNA id: TU84650


Basic Information

Item Value
RNA id TU84650
length 1228
lncRNA type inter_gene
GC content 0.59
exon number 2
gene id G67789
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 1840165 ~ 1842445 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAGGACTGTgcagctgccccccccgccTCCCTACCCCGGCTACAACCGCAAATAGCCTGGGCCTGGGGACCAAGGAGATCCCTGGCCCTGAGGCCCCTCCACTGAGGGAGATGGAGAATTGGAAATGAGACGGACAGAGGCGGACGGACGGAGAGACCCCCGCACCCAGCAGCGCCCCACAGCACAGCGCAGGAGACCCAGTGGAGCCAGGGGGCCTGGGACCGTGACCTCACTGCCATAGTGTCCAAACCCTCACCGTGCCTACCTGCTGCTGTGCCCGACAGGGGGGCGCCCTGTTCCAGCCGAGCCCTGAACGATTGGAGACACAATTAAGCCAAAATTGTTTCATTGGAcctttttaattactgttggcttttaggtggttggaggcggggcggggcggggcggaACTCAGTTAAGTGCCCGAGAGCTGAGCTGGCACAACAACGAAAACAAAGACTACTCCAAGGAAGACGCCCAGCTCCTGCAGGCGAGGCCGTGCCGTGCTGCGTGTCTGGGGCGGGTGAGGCCTCTGCTCTCACCACATGCTGCAGGGATGGGGGGTGGTGTCCTGTGTCCTGACCTGGCCCAGCAGAGCGAGGTGTGAGCCCCAGCCCCCCGGCCCCGCGCTGGCAGGCTGTGCTCAGTAAGCCTCTTACCCCTAATCCTGGCGCGGGAGGCTTCTCGCATTCCTGCAGGCTCATTTCTGCCTTATTTATTCTTCTTTCCCGTGCATTTTACGCCCCCCCGGGCCCTGCTCAGCAGGGACAGCAGCCTTGCCCCCCCATTCCCCTGCCCCGAGCGCAGGGCAGGCGACGCGGTGACTGTGACTCTGACGCTCCGACGGCATCAACACAGGAATCAGCGCTGCAGTGACTGAGCGGCCTGCCAAGAGCCTGGGTGGAGAAGGAAatggtttttgtgtttgtttgattgtttgtttgccaTGTTTGATCGCTGGGTCCCTTATCGAATGCGGTGCTTTGTAGTTGATTAAAGAAACTGTTCCTTGATTGGAGAATGGGCGTGGTCTGGCCCTGACTACATGGGCAGTCAGTGCGTGACGCTCTCTCCCCAGGCAGAGACCCCCCCGCGCTGGGACACACCGTCACACACTGGGATAAGCGGTTTTGTTGGTTTccactgtatttgtattattgctctgattgtgattttctttctgAGATGCAATGGACTGcagatttttaatataaatctttAAAGCTC

Function

GO: NA

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway
ko04110 Cell cycle
ko04914 Progesterone-mediated oocyte maturation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84655 lncRNA upstream 18407 1820573 ~ 1821758 (+) True G67792
TU84544 lncRNA upstream 563949 1275991 ~ 1276216 (+) True G67699
TU84543 lncRNA upstream 589851 1250099 ~ 1250314 (+) True G67698
TU84535 lncRNA upstream 817352 981839 ~ 1022813 (+) True G67690
TU84529 lncRNA upstream 1035419 804537 ~ 804746 (+) True G67685
TU84797 lncRNA downstream 234858 2077303 ~ 2077602 (+) True G67882
TU84819 lncRNA downstream 306004 2148449 ~ 2148654 (+) True G67899
TU84829 lncRNA downstream 491046 2333491 ~ 2333944 (+) True G67907
TU84830 lncRNA downstream 507684 2350129 ~ 2373305 (+) True G67908
TU84919 lncRNA downstream 903799 2746244 ~ 2755484 (+) True G67983
AMCG00014104 mRNA upstream 2158 1835830 ~ 1838007 (+) False AMCG00014104
AMCG00014101 mRNA upstream 6805 1825855 ~ 1833360 (+) True AMCG00014101
AMCG00014100 mRNA upstream 26867 1799682 ~ 1813298 (+) True AMCG00014100
AMCG00014095 mRNA upstream 275591 1545327 ~ 1564574 (+) True AMCG00014095
AMCG00014096 mRNA upstream 294940 1541410 ~ 1545225 (+) True AMCG00014096
AMCG00014102 mRNA downstream 16233 1858678 ~ 1869442 (+) True AMCG00014102
AMCG00014103 mRNA downstream 30304 1872749 ~ 1878960 (+) True AMCG00014103
AMCG00014111 mRNA downstream 58017 1900462 ~ 1902687 (+) False AMCG00014111
AMCG00014106 mRNA downstream 78894 1921339 ~ 1925062 (+) True AMCG00014106
AMCG00014112 mRNA downstream 166157 2008602 ~ 2022266 (+) True AMCG00014112
TU84663 other upstream 2040 1835432 ~ 1838125 (+) True AMCG00014104
TU84560 other upstream 356072 1483785 ~ 1484093 (+) False AMCG00014099
TU84388 other upstream 1733043 58449 ~ 107122 (+) True G67577
TU84672 other downstream 36646 1879091 ~ 1881041 (+) True G67801
TU84682 other downstream 57775 1900220 ~ 1902615 (+) True AMCG00014111
TU84815 other downstream 284427 2126872 ~ 2130145 (+) True G67896
TU84895 other downstream 864395 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other downstream 864395 2706840 ~ 2710329 (+) False AMCG00014146

Expression Profile