RNA id: TU84687


Basic Information

Item Value
RNA id TU84687
length 570
RNA type TUCP
GC content 0.58
exon number 3
gene id G67813
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 1801662 ~ 1869448 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aACAGAGCCAGAGCGCAGTGCCGCCTTGTTTTTTTgaagtttatttatgtaatacagTGTAGAAAGCTTTCCCAGTCACAGCAATGTTTGTACAGTcgcacagagatacagagaatCCCCCGGCTCCACGGCCCCCGGGCCCGCACTCGCACtgcgggagagggagagagagagcgagcgggGCGGGGCGGTCCGTCCAGAGCTGGTGGCGAAGCACAGCATCGTCACAAGAGCAAGAAGAAGAGTCgcctgcactgacacacacggATGAAATAAGCCACGCCCCTCTCCCCACTCCACCACCCCCGCCTGCGCTGGCTTTGGTACAGTCCAGGCTGCCCCGCCCACCACAGGGGGTCAGAGTTCAACAGGCCAGAGCTCCGGCTTCTGATCGGCCCAGCGTGGAGAGACACGCACCCGGTTCGAGAGCTTTGGTTTAAGAGTGCGACTTGGTGCGTGTCCGACTGTGTCAGAGTGCGCCAATAGTGTGACTACATGAGAGGAAGTGAGTGAGTGCGACTAAGCGAGTGTGTgaatacctgtgtgtgtgtgtgtgtgagagagagagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84597 lncRNA downstream 240329 1564787 ~ 1566340 (-) False AMCG00014098
TU84536 lncRNA downstream 708690 1097656 ~ 1097979 (-) True G67691
TU84530 lncRNA downstream 935042 871053 ~ 871627 (-) True G67686
TU84499 lncRNA downstream 1304884 500007 ~ 501785 (-) True G67658
TU84487 lncRNA downstream 1419728 386733 ~ 386941 (-) True G67646
TU84715 lncRNA upstream 9755 1879203 ~ 1882950 (-) False AMCG00014108
TU84744 lncRNA upstream 72579 1942027 ~ 1942420 (-) True G67849
TU84795 lncRNA upstream 187401 2056849 ~ 2059491 (-) True G67881
TU84803 lncRNA upstream 216663 2086111 ~ 2087121 (-) False AMCG00014119
TU84811 lncRNA upstream 225619 2095067 ~ 2124907 (-) False AMCG00014119
AMCG00014098 mRNA downstream 236740 1564778 ~ 1569929 (-) True AMCG00014098
AMCG00014097 mRNA downstream 268464 1537057 ~ 1538205 (-) True AMCG00014097
AMCG00014090 mRNA downstream 352052 1453775 ~ 1454617 (-) True AMCG00014090
AMCG00014091 mRNA downstream 393822 1391356 ~ 1412847 (-) True AMCG00014091
AMCG00014082 mRNA downstream 526272 1267242 ~ 1280397 (-) True AMCG00014082
AMCG00014105 mRNA upstream 789 1870237 ~ 1873422 (-) True AMCG00014105
AMCG00014108 mRNA upstream 9760 1879208 ~ 1885432 (-) True AMCG00014108
AMCG00014109 mRNA upstream 26217 1895665 ~ 1898909 (-) True AMCG00014109
AMCG00014107 mRNA upstream 33968 1903416 ~ 1903733 (-) True AMCG00014107
AMCG00014110 mRNA upstream 36702 1906150 ~ 1915590 (-) True AMCG00014110
TU84527 other downstream 1015712 790528 ~ 790957 (-) True G67683
TU84434 other downstream 1635455 61992 ~ 171214 (-) False G67612
TU84711 other upstream 402 1869850 ~ 1871154 (-) False AMCG00014105
TU84716 other upstream 9755 1879203 ~ 1882950 (-) False AMCG00014108
TU84719 other upstream 22615 1892063 ~ 1892553 (-) True G67835
TU84714 other upstream 31192 1900640 ~ 1902615 (-) True G67832
TU84738 other upstream 47279 1916727 ~ 1918182 (-) True G67843

Expression Profile