RNA id: TU84705


Basic Information

Item Value
RNA id TU84705
length 1228
RNA type TUCP
GC content 0.59
exon number 2
gene id G67825
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 1840165 ~ 1842445 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGCTTTaaagatttatattaaaaatctgCAGTCCATTGCATCTcagaaagaaaatcacaatcagagcaataatacaaatacagtggAAACCAACAAAACCGCTTATCCCAGTGTGTGACGGTGTGTCCCAGCGCGGGGGGGTCTCTGCCTGGGGAGAGAGCGTCACGCACTGACTGCCCATGTAGTCAGGGCCAGACCACGCCCATTCTCCAATCAAGGAACAGTTTCTTTAATCAACTACAAAGCACCGCATTCGATAAGGGACCCAGCGATCAAACAtggcaaacaaacaatcaaacaaacacaaaaaccatTTCCTTCTCCACCCAGGCTCTTGGCAGGCCGCTCAGTCACTGCAGCGCTGATTCCTGTGTTGATGCCGTCGGAGCGTCAGAGTCACAGTCACCGCGTCGCCTGCCCTGCGCTCGGGGCAGGGGAATGGGGGGGCAAGGCTGCTGTCCCTGCTGAGCAGGGCCCGGGGGGGCGTAAAATGCACGGGAAAGAAGAATAAATAAGGCAGAAATGAGCCTGCAGGAATGCGAGAAGCCTCCCGCGCCAGGATTAGGGGTAAGAGGCTTACTGAGCACAGCCTGCCAGCGCGGGGCCGGGGGGCTGGGGCTCACACCTCGCTCTGCTGGGCCAGGTCAGGACACAGGACACCACCCCCCATCCCTGCAGCATGTGGTGAGAGCAGAGGCCTCACCCGCCCCAGACACGCAGCACGGCACGGCCTCGCCTGCAGGAGCTGGGCGTCTTCCTTGGAGTAGTCTTTGTTTTCGTTGTTGTGCCAGCTCAGCTCTCGGGCACTTAACTGAGTtccgccccgccccgccccgcctccaaccacctaaaagccaacagtaattaaaaaggTCCAATGAAACAATTTTGGCTTAATTGTGTCTCCAATCGTTCAGGGCTCGGCTGGAACAGGGCGCCCCCCTGTCGGGCACAGCAGCAGGTAGGCACGGTGAGGGTTTGGACACTATGGCAGTGAGGTCACGGTCCCAGGCCCCCTGGCTCCACTGGGTCTCCTGCGCTGTGCTGTGGGGCGCTGCTGGGTGCGGGGGTCTCTCCGTCCGTCCGCCTCTGTCCGTCTCATTTCCAATTCTCCATCTCCCTCAGTGGAGGGGCCTCAGGGCCAGGGATCTCCTTGGTCCCCAGGCCCAGGCTATTTGCGGTTGTAGCCGGGGTAGGGAggcggggggggcagctgcACAGTCCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84693 lncRNA downstream 18406 1820612 ~ 1821759 (-) False G67818
TU84694 lncRNA downstream 18406 1820612 ~ 1821759 (-) True G67818
TU84597 lncRNA downstream 273825 1564787 ~ 1566340 (-) False AMCG00014098
TU84536 lncRNA downstream 742186 1097656 ~ 1097979 (-) True G67691
TU84530 lncRNA downstream 968538 871053 ~ 871627 (-) True G67686
TU84715 lncRNA upstream 36758 1879203 ~ 1882950 (-) False AMCG00014108
TU84744 lncRNA upstream 99582 1942027 ~ 1942420 (-) True G67849
TU84795 lncRNA upstream 214404 2056849 ~ 2059491 (-) True G67881
TU84803 lncRNA upstream 243666 2086111 ~ 2087121 (-) False AMCG00014119
TU84811 lncRNA upstream 252622 2095067 ~ 2124907 (-) False AMCG00014119
AMCG00014098 mRNA downstream 270236 1564778 ~ 1569929 (-) True AMCG00014098
AMCG00014097 mRNA downstream 301960 1537057 ~ 1538205 (-) True AMCG00014097
AMCG00014090 mRNA downstream 385548 1453775 ~ 1454617 (-) True AMCG00014090
AMCG00014091 mRNA downstream 427318 1391356 ~ 1412847 (-) True AMCG00014091
AMCG00014082 mRNA downstream 559768 1267242 ~ 1280397 (-) True AMCG00014082
AMCG00014105 mRNA upstream 27792 1870237 ~ 1873422 (-) True AMCG00014105
AMCG00014108 mRNA upstream 36763 1879208 ~ 1885432 (-) True AMCG00014108
AMCG00014109 mRNA upstream 53220 1895665 ~ 1898909 (-) True AMCG00014109
AMCG00014107 mRNA upstream 60971 1903416 ~ 1903733 (-) True AMCG00014107
AMCG00014110 mRNA upstream 63705 1906150 ~ 1915590 (-) True AMCG00014110
TU84527 other downstream 1049208 790528 ~ 790957 (-) True G67683
TU84434 other downstream 1668951 61992 ~ 171214 (-) False G67612
TU84703 other upstream 17097 1859542 ~ 1863693 (-) True G67824
TU84685 other upstream 23949 1866394 ~ 1869448 (-) True G67813
TU84711 other upstream 27405 1869850 ~ 1871154 (-) False AMCG00014105
TU84716 other upstream 36758 1879203 ~ 1882950 (-) False AMCG00014108
TU84719 other upstream 49618 1892063 ~ 1892553 (-) True G67835

Expression Profile