RNA id: TU84797



Basic Information


Item Value
RNA id TU84797
length 300
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G67882
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2077303 ~ 2077602 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GAAACAGCAGCCTTTTCAGTCTTGTTCAAAATGCAGTTggtcctattattattagtattatattgctatatgtattattattattattattattattattattattattattattattattgtattgtcgTGAAACAGCACTTTTCAGTcttgtttaaaatgcagttggtgtgatttgtgtttctgtgagagAGAGTCCCGCTGTTTGTGTGATTGTGGCGGCATCTGTCTGCTGTACTGCTccacattgaaatgtattattatataacaataacattatatggaaactgaaatataaaa

Function


GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU84650 lncRNA upstream 234858 1840165 ~ 1842445 (+) True G67789
TU84655 lncRNA upstream 255545 1820573 ~ 1821758 (+) True G67792
TU84544 lncRNA upstream 801087 1275991 ~ 1276216 (+) True G67699
TU84543 lncRNA upstream 826989 1250099 ~ 1250314 (+) True G67698
TU84535 lncRNA upstream 1054490 981839 ~ 1022813 (+) True G67690
TU84819 lncRNA downstream 70847 2148449 ~ 2148654 (+) True G67899
TU84829 lncRNA downstream 255889 2333491 ~ 2333944 (+) True G67907
TU84830 lncRNA downstream 272527 2350129 ~ 2373305 (+) True G67908
TU84919 lncRNA downstream 668642 2746244 ~ 2755484 (+) True G67983
TU84927 lncRNA downstream 689900 2767502 ~ 2768837 (+) True G67988
AMCG00014113 mRNA upstream 48792 2024598 ~ 2028511 (+) True AMCG00014113
AMCG00014112 mRNA upstream 55037 2008602 ~ 2022266 (+) True AMCG00014112
AMCG00014106 mRNA upstream 152241 1921339 ~ 1925062 (+) True AMCG00014106
AMCG00014111 mRNA upstream 174616 1900462 ~ 1902687 (+) False AMCG00014111
AMCG00014103 mRNA upstream 198343 1872749 ~ 1878960 (+) True AMCG00014103
AMCG00014120 mRNA downstream 5824 2083426 ~ 2113366 (+) True AMCG00014120
AMCG00014124 mRNA downstream 84155 2161757 ~ 2172540 (+) True AMCG00014124
AMCG00014122 mRNA downstream 102044 2179646 ~ 2195573 (+) True AMCG00014122
AMCG00014123 mRNA downstream 144013 2221615 ~ 2222904 (+) True AMCG00014123
AMCG00014121 mRNA downstream 162036 2239638 ~ 2253288 (+) True AMCG00014121
TU84682 other upstream 174688 1900220 ~ 1902615 (+) True AMCG00014111
TU84672 other upstream 196262 1879091 ~ 1881041 (+) True G67801
TU84663 other upstream 239178 1835432 ~ 1838125 (+) True AMCG00014104
TU84560 other upstream 593210 1483785 ~ 1484093 (+) False AMCG00014099
TU84388 other upstream 1970181 58449 ~ 107122 (+) True G67577
TU84815 other downstream 49270 2126872 ~ 2130145 (+) True G67896
TU84895 other downstream 629238 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other downstream 629238 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other downstream 629238 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other downstream 631422 2709024 ~ 2710329 (+) True AMCG00014146

Expression Profile