RNA id: TU84829


Basic Information

Item Value
RNA id TU84829
length 454
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G67907
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2333491 ~ 2333944 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctcacgtgcccattgtaggcgctttcggcagtggacaggggtcagcatgggcaccctgactggtctgcggctacgcagccccatacgcaacaaactgcgatgcactgtgtgttctgacacctttctatcagaaccagcattcactttttcagcaatttgagctacagtagcttgtctgttggatcggaccacacaggttCACCTGCGCtacccacgtgcatcaatgagccttggccgcccatgaccctgtcgccggttcaccgcttttccttccttggaccacttttgataggtactgaccactgcagaccgggaacaccccacaagagctgcagttttggagatgctctgacccagtcgtctagccatcacaatttggcccttgtcaaagttgctcagatccttacgctgcccatttttcctgcttctaacacatcaactttgaggacaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84819 lncRNA upstream 184837 2148449 ~ 2148654 (+) True G67899
TU84797 lncRNA upstream 255889 2077303 ~ 2077602 (+) True G67882
TU84650 lncRNA upstream 491046 1840165 ~ 1842445 (+) True G67789
TU84655 lncRNA upstream 511733 1820573 ~ 1821758 (+) True G67792
TU84544 lncRNA upstream 1057275 1275991 ~ 1276216 (+) True G67699
TU84830 lncRNA downstream 16185 2350129 ~ 2373305 (+) True G67908
TU84919 lncRNA downstream 412300 2746244 ~ 2755484 (+) True G67983
TU84927 lncRNA downstream 433558 2767502 ~ 2768837 (+) True G67988
TU84933 lncRNA downstream 448395 2782339 ~ 2802044 (+) True G67994
TU84941 lncRNA downstream 458798 2792742 ~ 2797809 (+) True G67997
AMCG00014125 mRNA upstream 8101 2276709 ~ 2325390 (+) True AMCG00014125
AMCG00014121 mRNA upstream 80203 2239638 ~ 2253288 (+) True AMCG00014121
AMCG00014123 mRNA upstream 110587 2221615 ~ 2222904 (+) True AMCG00014123
AMCG00014122 mRNA upstream 137918 2179646 ~ 2195573 (+) True AMCG00014122
AMCG00014124 mRNA upstream 160951 2161757 ~ 2172540 (+) True AMCG00014124
AMCG00014139 mRNA downstream 44290 2378234 ~ 2389212 (+) True AMCG00014139
AMCG00014129 mRNA downstream 66474 2400418 ~ 2401353 (+) True AMCG00014129
AMCG00014127 mRNA downstream 80618 2414562 ~ 2422277 (+) True AMCG00014127
AMCG00014140 mRNA downstream 100873 2434817 ~ 2438719 (+) True AMCG00014140
AMCG00014135 mRNA downstream 117105 2451049 ~ 2454556 (+) True AMCG00014135
TU84815 other upstream 203346 2126872 ~ 2130145 (+) True G67896
TU84682 other upstream 430876 1900220 ~ 1902615 (+) True AMCG00014111
TU84672 other upstream 452450 1879091 ~ 1881041 (+) True G67801
TU84663 other upstream 495366 1835432 ~ 1838125 (+) True AMCG00014104
TU84560 other upstream 849398 1483785 ~ 1484093 (+) False AMCG00014099
TU84895 other downstream 372896 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other downstream 372896 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other downstream 372896 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other downstream 375080 2709024 ~ 2710329 (+) True AMCG00014146
TU85565 other downstream 2315256 4649200 ~ 4651964 (+) True G68475

Expression Profile