RNA id: TU84927


Basic Information

Item Value
RNA id TU84927
length 508
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G67988
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2767502 ~ 2768837 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTCCAGCCACCTCACTGTCAACATCACACAGTACATCACTGTGAGCTGCATCATTGAAAACCCCCGACTCAGTGAGAACAAGACGTCACCAGAGAGGAGCTTCACAGTTCAGACAAAGGAAGACTCTAACAGTGGCTGGACCACTGGAGTGGCTGTGGGAGTAGTACTGGCTGTGGGTGCTCTGGTTGCAGCAGTAGTTATCTATAAAAAGTATAGATGTGATGGGACTGGAGTGATATAACAATCACAAAGGTAACTGTATTGACTGCATTATGCTGAGTAGCCCCCTGTAGGCTATAACTCAATAGGCTGTAATATTACAGGATCAGGTGGTTGATGACATCATGCCTGTTTTCCAGTtagatgataaaaaaaagttaaatggcAGTAACTGAAAGGAACATCTAGTGTACAACACCCCTGTTTCAGCAGTCATTCATCCCTAATTTGTAGATGAAATTCAAGTTTATTTCCGGTCTGTAAGAACCATTCTTGTTATACCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84919 lncRNA upstream 12018 2746244 ~ 2755484 (+) True G67983
TU84830 lncRNA upstream 394197 2350129 ~ 2373305 (+) True G67908
TU84829 lncRNA upstream 433558 2333491 ~ 2333944 (+) True G67907
TU84819 lncRNA upstream 618848 2148449 ~ 2148654 (+) True G67899
TU84797 lncRNA upstream 689900 2077303 ~ 2077602 (+) True G67882
TU84933 lncRNA downstream 13502 2782339 ~ 2802044 (+) True G67994
TU84941 lncRNA downstream 23905 2792742 ~ 2797809 (+) True G67997
TU84995 lncRNA downstream 207377 2976214 ~ 2976510 (+) True G68046
TU85148 lncRNA downstream 455737 3224574 ~ 3226499 (+) True G68151
TU85150 lncRNA downstream 458022 3226859 ~ 3228126 (+) True G68153
AMCG00014146 mRNA upstream 57173 2707815 ~ 2710329 (+) False AMCG00014146
AMCG00014126 mRNA upstream 206325 2558599 ~ 2561177 (+) True AMCG00014126
AMCG00014130 mRNA upstream 210934 2549354 ~ 2556568 (+) True AMCG00014130
AMCG00014128 mRNA upstream 225104 2539703 ~ 2542398 (+) True AMCG00014128
AMCG00014137 mRNA upstream 270355 2486625 ~ 2497147 (+) True AMCG00014137
AMCG00014147 mRNA downstream 6541 2775378 ~ 2778596 (+) True AMCG00014147
AMCG00014148 mRNA downstream 19758 2788595 ~ 2790836 (+) True AMCG00014148
AMCG00014149 mRNA downstream 50705 2819542 ~ 2821456 (+) True AMCG00014149
AMCG00014161 mRNA downstream 140592 2909429 ~ 2915164 (+) True AMCG00014161
AMCG00014152 mRNA downstream 154563 2923400 ~ 2928310 (+) True AMCG00014152
TU84895 other upstream 57173 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 57173 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 57173 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 57173 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 637357 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 1880363 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 1880363 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 4577358 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 4644803 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 7234221 10003058 ~ 10008648 (+) True G69406

Expression Profile