RNA id: TU85055


Basic Information

Item Value
RNA id TU85055
length 741
RNA type TUCP
GC content 0.45
exon number 4
gene id G68088
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2825562 ~ 2829144 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tattatttaattttcgAATTGAcgaatgaatgtatgaattaaatatttaatttttaatcggttgcggcttccccgcgaccctcatcAGGATAAGACGTTTTGAACATGGATGATGGATTTTGACCCTTAAAATGCTCCACATGACAGGACAATTTACAACACAAACTACTATCCATACAGTCGACCAGGAGGCAGCGCTACTTCGCAGCCATGCGATCAACAAGGAAGTCATTGGTTTAGTTTCACTTTCTTCTGACGGGAGTTTCCAGTTTGCAATGATCGTTTGCGGGGGATGTCGTGGTATTTGATGATTGCAGCTCTCCTCATCTGTGCCACTGACAACAGCAGCACAGGCAATGACTGCATTGTTGGGGTCATTGGGGAAGCCACTGTCCTGCCCTGTCACTacacaggagaggagagactgGAGCAGAGAAACATTGCCCTTGAATGGAGGACAGACAGTGTTGTTGTGCACAGCTTTGTTAATGGAGAGGATGTGCTGAATAAACAGGGCAAGAACTACCACAATAGAACCCATCTCTTCAAACAGCACCTGGAGAAAGGGAATTTCTCTCTGCGACTCTCAGATACAGGGAAGGAAGATGAGCAGCACTATAAGTGTCTTTATTATTCTAAAAGTATTAAGAAAACCATACATCTGAACAAAATGTGCCTCTCTGTTGCAGCCCATTACTCAGAGCCAGGGCTGCACAGAGTCCCAGTCCCAGAGGGAGGAGA

Function

GO:

id name namespace
GO:0008233 peptidase activity molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85038 lncRNA downstream 20398 2776259 ~ 2805164 (-) True G68077
TU85041 lncRNA downstream 23518 2782510 ~ 2802044 (-) False G68078
TU85040 lncRNA downstream 40149 2782510 ~ 2785413 (-) True G68078
TU85037 lncRNA downstream 54902 2769838 ~ 2770660 (-) True G68076
TU85032 lncRNA downstream 59388 2765190 ~ 2766174 (-) False G68073
TU85111 lncRNA upstream 199965 3029109 ~ 3032764 (-) True G68124
TU85159 lncRNA upstream 397721 3226865 ~ 3228150 (-) True G68162
TU85184 lncRNA upstream 561844 3390988 ~ 3391380 (-) False AMCG00014181
TU85251 lncRNA upstream 634291 3463435 ~ 3464792 (-) True G68224
TU85344 lncRNA upstream 1127858 3957002 ~ 3957266 (-) True G68304
AMCG00014151 mRNA downstream 73567 2745345 ~ 2751995 (-) True AMCG00014151
AMCG00014150 mRNA downstream 90690 2731531 ~ 2734872 (-) True AMCG00014150
AMCG00014142 mRNA downstream 150152 2667981 ~ 2675410 (-) True AMCG00014142
AMCG00014144 mRNA downstream 172315 2641189 ~ 2653247 (-) True AMCG00014144
AMCG00014145 mRNA downstream 190246 2631658 ~ 2635316 (-) True AMCG00014145
AMCG00014155 mRNA upstream 21268 2850412 ~ 2868349 (-) True AMCG00014155
AMCG00014153 mRNA upstream 41317 2870461 ~ 2879884 (-) True AMCG00014153
AMCG00014156 mRNA upstream 51370 2880514 ~ 2892222 (-) True AMCG00014156
AMCG00014154 mRNA upstream 64710 2893854 ~ 2904687 (-) True AMCG00014154
AMCG00014157 mRNA upstream 101470 2930614 ~ 2935152 (-) True AMCG00014157
TU84998 other downstream 181655 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 282865 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 907380 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 922947 1900640 ~ 1902615 (-) True G67832
TU84719 other downstream 933009 1892063 ~ 1892553 (-) True G67835
TU86038 other upstream 4548944 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 4588454 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 5308187 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 5327085 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 5554141 8383285 ~ 8384224 (-) True G69156

Expression Profile