RNA id: TU85148


Basic Information

Item Value
RNA id TU85148
length 1926
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G68151
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 3224574 ~ 3226499 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCCTCATCCTGTCCTTAGAGGGAGTGGAGACCAAGTAAAttggtttgaaaataaaaaagataaacgGTGAAAGCAGCTCCTGAACTTGTCTGTGTGAAGCCATCCAGTGACAGGAACAAAACGATGTTGTGCATGCCTGACTCATCGTGTCCCTACCGACATCCAGCTACAGGAGACATTGTTTCCACTGTAAACATCTAGTGTCGGTTGCCAGTAATCAATCTCGGCAGATCACATTCATACGCTGTCAAATTCTGCTCCGAGTTCGTGTCGGATCAGTTTAAATACGGCACACGTTCTAGTTTCCATGCATGTTCGAAGGCGACAATAACTGAAAACACTTCAAATCGGCCAGGGTGTGAGTTACAGCTCTTGGGGAAGAAGAGAACACTATTTATGAAATTGAGAAAAGGGAATTTCAGTCTTAGACCATATcgtgtctgtctgttttccaGAGTGTTCTTTCATAGCGCCTGTCATTGCGATTAAGGAAGTGGTCTTCAACACAGGCATGAAGGGAGCATTAGAGCAGATAATGTATCCCAATATTCGCCCAGTTTGGCAAAGACAGAACTGACGGACAATGCCGACTGAAAGCCACATGTTTATTTTAGGAAACTGCTGGGTAGGGAATATATTTGACGAGACAATTCGGCTGTGTGGCACTTGAAACTATAGACGTCATTAATATAAAATCTACAATTTCCCTCGAAGTGGCGAAGTGGCTTTATTTTCCAGTGCAGTGGCACGAGGCTTCAAGGGTCTGAATGCCAGTAAAGTCACTGTTTCCTGGTTGTGAACGAGCCTGGCGTTAAGATGGTGAAATGCCAGGGCTGTTCTTCGCCCCACACCCAAGGGGCAAGACCTGCGAGTCCAGCTCGAGGGTGGGAAAGTCGCGGCTCTCTGAAACGCAGCGATCTTACCTGAACACGAACACTGATCTGTGCCAAGTCTCTTCTGCGTCTCTGTCAAGTGTCCATGTTTGTTGGGAACGGCACAATATCCTTAGAAAGCCCTGCTAGTTCACCTTAACAGTCCTGGTCACAGCAGCGTTCGAAGGGGAAGCTTTCAGTGGGTTCAGATCAACAGTGAGGCGAGTGACGCAGAACTGGGGGGGGAATTCCAGGAGGACAGGGTGCAGTATCTTCTGACTTCTGCTCCATCTTCAGGCTCCAGTTTATTATTGCAATGATTCGATCTGATCTGCATCCCACCCCTCTCCCCCGTTTCAGAACATTTCGTACGCATCTGCATATCTGACGTGCGTCGCTCTCAGAAGGGACTGCCTCGGTGCAGAGCCAGCTCAATACATCAATACGTTTTTCACGGAGCTCTACAGCTCTGTCTTCGGTATTATAATGACTCTTTACTTTACCCCTGGGTGGCACTGCCTTTACAGTGTGTAGCTGCTTCTTATGTGTGTgcggatgtatttatttattctatatttGCCTGGACCGGACATGCGTGTACAGATCTGTTGGACTGACGTCGTGTGGCTGTATGTGGAGCAGGGCCCTCGTCCTGCCGTTCGACCCGTGCGTACGTGCTGTCGTTGTCTAGGCTAGAGACAGCCCTTGCTGATCGATGTCACGCGAGAGGCAGTGATTTTGTATGCATTGATATTTGGGTACTGAATGAAGATTTTATACTAATAACCACATGATGGTTCACATTTTTTTAACGATGCGCTGGGAAAAGTGAcgtgaatgaaaataaaaatggttcaGCAGTCCTGTGTGTCCGCTTCATTATTTGACTTTAACTCCTCACAGCCGTGTTTCTACAGGGGACGACGGATCAAGCTGAAATGAGTTTGGGTCGATCTGAAAACCGGATAGTTGCGAAGGTTTTGGCGACTCTTTAATGACTGTACACAACAATCTTCAGAGGCGCCTCCTCTAGTGCTCTACTGTCAATAACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84995 lncRNA upstream 248064 2976214 ~ 2976510 (+) True G68046
TU84933 lncRNA upstream 422530 2782339 ~ 2802044 (+) True G67994
TU84941 lncRNA upstream 426765 2792742 ~ 2797809 (+) True G67997
TU84927 lncRNA upstream 455737 2767502 ~ 2768837 (+) True G67988
TU84919 lncRNA upstream 469090 2746244 ~ 2755484 (+) True G67983
TU85150 lncRNA downstream 360 3226859 ~ 3228126 (+) True G68153
TU85167 lncRNA downstream 148338 3374837 ~ 3375148 (+) True G68166
TU85168 lncRNA downstream 149086 3375585 ~ 3375789 (+) True G68167
TU85192 lncRNA downstream 184479 3410978 ~ 3483649 (+) True G68189
TU85329 lncRNA downstream 727867 3954366 ~ 3955265 (+) True G68292
AMCG00014165 mRNA upstream 2653 3220203 ~ 3221921 (+) True AMCG00014165
AMCG00014166 mRNA upstream 48519 3171834 ~ 3176055 (+) True AMCG00014166
AMCG00014164 mRNA upstream 58357 3149895 ~ 3166217 (+) True AMCG00014164
AMCG00014162 mRNA upstream 179829 3044338 ~ 3044745 (+) True AMCG00014162
AMCG00014163 mRNA upstream 193871 2996445 ~ 3030703 (+) True AMCG00014163
AMCG00014171 mRNA downstream 112853 3339352 ~ 3370944 (+) True AMCG00014171
AMCG00014170 mRNA downstream 151193 3377692 ~ 3378273 (+) True AMCG00014170
AMCG00014174 mRNA downstream 165108 3391607 ~ 3397123 (+) True AMCG00014174
AMCG00014175 mRNA downstream 171792 3398291 ~ 3409107 (+) True AMCG00014175
AMCG00014176 mRNA downstream 207658 3434157 ~ 3452490 (+) True AMCG00014176
TU84895 other upstream 514245 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 514245 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 514245 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 514245 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 1094429 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 1422701 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 1422701 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 4119696 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 4187141 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 6776559 10003058 ~ 10008648 (+) True G69406

Expression Profile