RNA id: TU85358



Basic Information


Item Value
RNA id TU85358
length 202
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G68317
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 4083763 ~ 4083964 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCCTCGCCGTCACCCGTCTCGGTTGTGTTTGAGGTGAGTTGCTCTCCAGTCTCCGTGCATGATGGAAATCTTAGCATCTGTGTCCGTGTGCAACAGTGTCCCCATTTTGACCAAGACACCACAGGAGACTCCTCTAATCCAGGATTGTGTCGGTCGGCATCCGTTCTGTTTTTGCCCATTGTGTGAATTGTTATGTTTCCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU85329 lncRNA upstream 128498 3954366 ~ 3955265 (+) True G68292
TU85192 lncRNA upstream 600114 3410978 ~ 3483649 (+) True G68189
TU85168 lncRNA upstream 707974 3375585 ~ 3375789 (+) True G68167
TU85167 lncRNA upstream 708615 3374837 ~ 3375148 (+) True G68166
TU85150 lncRNA upstream 855637 3226859 ~ 3228126 (+) True G68153
TU85370 lncRNA downstream 43512 4127476 ~ 4131718 (+) True AMCG00014196
TU85439 lncRNA downstream 209362 4293326 ~ 4293526 (+) True G68374
TU85441 lncRNA downstream 210853 4294817 ~ 4295819 (+) True G68376
TU85500 lncRNA downstream 416900 4500864 ~ 4550002 (+) True G68422
TU85517 lncRNA downstream 500510 4584474 ~ 4588428 (+) False G68434
AMCG00014194 mRNA upstream 1859 4046971 ~ 4081904 (+) True AMCG00014194
AMCG00014192 mRNA upstream 133486 3933258 ~ 3950277 (+) True AMCG00014192
AMCG00014186 mRNA upstream 454681 3617227 ~ 3629082 (+) True AMCG00014186
AMCG00014187 mRNA upstream 468682 3595095 ~ 3615081 (+) True AMCG00014187
AMCG00014188 mRNA upstream 500818 3582619 ~ 3582945 (+) True AMCG00014188
AMCG00014195 mRNA downstream 4399 4088363 ~ 4098941 (+) True AMCG00014195
AMCG00014197 mRNA downstream 22220 4106184 ~ 4118772 (+) True AMCG00014197
AMCG00014196 mRNA downstream 43667 4127631 ~ 4129668 (+) False AMCG00014196
AMCG00014199 mRNA downstream 121191 4205155 ~ 4220124 (+) True AMCG00014199
AMCG00014198 mRNA downstream 139580 4223544 ~ 4227643 (+) True AMCG00014198
TU84895 other upstream 1373434 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 1373434 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 1373434 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 1373434 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 1953618 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 565236 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 565236 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 3262231 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 3329676 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 5919094 10003058 ~ 10008648 (+) True G69406

Expression Profile