RNA id: TU85379


Basic Information

Item Value
RNA id TU85379
length 2395
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G68336
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 4105518 ~ 4129741 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTAGTGCAACCAGGGAGGGTGACTAAAACTAtgtggcaattaaaaaaaaaaaagaaaaggtttggACACAACTGTGCAAATAAACCACTTTATTCAAACAGTTTTGGTTTCCATTACTTTAAAGGTTTCGTGCTAAAGTATACGGTTGCTCCAGCTTTTTACAGTAACATTCAGAAGATTGCAGCTGCAATACGTTTATTATAACTTGAAATCTCTTACATTCATCTCACATTACTGAAAGCCTTGAAACAGGATGAAAAAANNNNNNNNNNAAATACcactacccccaccccccaaaaaaatcccAATGAACCTTAAATTTGAATATGGAGTCCCGAAATGCACTCAAACACAGAATCCCTTCTTCTTCCAGTCTCCAGTGTCGATGGTCTGCATTATTCCATTAAAAAGAACCACAAAGCGCTACAcgttttaaacttttatttgcatatcaaaacaaaaatgggttGTGCATTCCAAGAacttaaatcataaaaaaaaaaaatggcactcgattttttcaaagcattttacGGATCACGGGACGCCACACGGCACGGAGATGTTAACGTGGATCCCTGGAGGAGTGGGTCGCCCCCTGGAGCCCCTCCGTGTTCAGAGGGTCGGTGCCAACGAGAGGATCAAAGAAAGCCAAGACGCTGGGACGGGCGGACGAGTCCCCCGCAGACGGACAGTCAGTAGTTTCTTGTAATTGGTGCTGTAGGGGGGGCGGTGGGGGCAGCGCAGTCATCTGGTCTCGTCCAATCACAACGCATACTTAGTTTGTTACAAAGTTACAGCTAAGAGAAGTGAAAAAAGAAGGCAATGCTTGTGGAATGTACAGTGCAGCCCGCAGGCGCGCCTCAGGACGTCTCCGCCTGCTTCTCCTGTTCAATGGTTCTTTTGACGGCAAGGGATTTTTCTCCTGGGTCTCCGTCTTCTTCAGTTTGGTCTTGTCGAAGTTGGTCACTTCCTCCATGTTTGGTTTGTCAGACATGATTGCAGGATATCTGGAATGAAGAACACATCCAGATCTGGTTTAGGCGTCTGTGTCGCATGGACAAGGCGGGTCACTCAGCTCTTTTGTTCTCTCATGTGCACACAGACGCCCCCCAGCAGAGCTGCTACAGCGCCGCATCAATGCACTCCAGCACAGGGACCCCCCCCCTTCGCTAAATCGGCAgtttccaaatgtttttcagCCCAAGATAAGGAGAACAAAAACTCCCAACTCCCCCCTGGATTCCTTTCTGGGATACATCaccgcagatctgcagaacaATGCCAGTCCAGCAGGGCGGACGCCAGAGCAAAGCCTGCAAGTCACTGGCACATGCcgtttggggggggggattggtttattttatttatttttggtttccgCTTTTAAAGAGAAATTATACAGAAGTGCATTTCGCAACATCACTAGTATCAGTCGTCGTTTTTCTAGAGCCCCAGTGCgcagacacgcacacaaagCGCAGCCCGCAGTCTGGACCACCGCCCTCCCCGCATCCTCCCGCAGCGCCGGCTCCGCTGCGCCAATTAACACGCAATTAGAACCGCACGCACACAAACGGACGCGCCGCAGATCGGGCGGCTGCAAACGCAACCTGTCTGGGCAGATGAACGTGCAACAGCACTACCCACACGCAGCGAAAGCAAGCCCCTTAGATTTGCATCGATTTTAAGGCTCGTCTAACCATTTACGCTGACGTCACAgtaaaactaattaaacaaaaccttcACGCAGACCGGGAGCAACACAAAGCCAGGCCACCGAGAAAGAGACAACGTAACTGCTGCACGGACATCTGTGGTCTTGCTAATTCCAAGACAAATCTGAAAGGGTTTCTAAAACACAGTCCGGCTCTGTGTCCAGCGTCCCCGCAGGCTGTGCTGGTAAAGGCGCTAAAGCAATGGAACCCACTCACCAGGGTGCGACTGCGCGGAGATCAGTCTCTGTCTGGACGCGGCGGCGGACTGACGAGCAGCCGCTCAAGCCACGCAATTATACCCCCAGATATGCAAATCACCCCCGTGACGTCACCGCACCGAGCGCACAAAAAGGCCCCGATATGCACTCCTGCACACCAATATTCACCTTTCCCTTCACTATCAGCCCCCGCACAATGTGAGCCCCTCTTACTGGCGAATATATTAGAGAAAGATAAAGCAAATCCGTATAAATTTCCCCGTTTCATCAAAGATGCCGCTGAGCTCCCCCATTGTTCTGCAATATGGCGTCAAAGGCGACACCTGGTGGCGGTTTCCTGTATCTCTTCAAAGATAATTGGTAGAAGTACCACACAATAGCTAATTTTTCTTGTATGTGTGTAATGATCCTTTTCTGTGTCAATTTGATGTCTTTCTCTTGAGTCTGTTGCGCACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85367 lncRNA downstream 27295 4099564 ~ 4099927 (-) True G68325
TU85365 lncRNA downstream 28747 4096215 ~ 4098475 (-) True G68324
TU85366 lncRNA downstream 28747 4096215 ~ 4098475 (-) False G68324
TU85344 lncRNA downstream 169956 3957002 ~ 3957266 (-) True G68304
TU85251 lncRNA downstream 662430 3463435 ~ 3464792 (-) True G68224
TU85456 lncRNA upstream 168564 4298305 ~ 4299684 (-) True G68386
TU85481 lncRNA upstream 286915 4416656 ~ 4416934 (-) True G68406
TU85564 lncRNA upstream 517961 4647702 ~ 4648211 (-) True G68474
TU85610 lncRNA upstream 756184 4885925 ~ 4886283 (-) True G68514
TU85633 lncRNA upstream 1204351 5334092 ~ 5334383 (-) True G68535
AMCG00014193 mRNA downstream 205907 3914862 ~ 3921315 (-) True AMCG00014193
AMCG00014191 mRNA downstream 295939 3807265 ~ 3831283 (-) True AMCG00014191
AMCG00014189 mRNA downstream 426461 3700069 ~ 3700761 (-) True AMCG00014189
AMCG00014190 mRNA downstream 448966 3657077 ~ 3678256 (-) True AMCG00014190
AMCG00014185 mRNA downstream 553775 3566511 ~ 3573447 (-) True AMCG00014185
AMCG00014203 mRNA upstream 164160 4293901 ~ 4297462 (-) True AMCG00014203
AMCG00014205 mRNA upstream 190453 4320194 ~ 4325828 (-) True AMCG00014205
AMCG00014206 mRNA upstream 252862 4382603 ~ 4382845 (-) True AMCG00014206
AMCG00014204 mRNA upstream 254404 4384145 ~ 4389193 (-) True AMCG00014204
AMCG00014210 mRNA upstream 382080 4511821 ~ 4520399 (-) True AMCG00014210
TU85055 other downstream 1298078 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 1483315 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 1584525 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 2209040 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 2224607 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 3248347 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 3287857 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 4007590 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 4026488 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 4253544 8383285 ~ 8384224 (-) True G69156

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2034023 True 875 lncRNA 0.42 3 NC_048586.1 12104010 ~ 12105116 (+)
tiger barb (Puntius tetrazona) TU73734 False 2222 lncRNA 0.41 2 NC_056705.1 3735778 ~ 3738176 (-)