RNA id: TU85564


Basic Information

Item Value
RNA id TU85564
length 446
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G68474
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 4647702 ~ 4648211 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggcccgtgtggtccgatccaacagacgagctactgtagctcaaattgctgaaaaagtgaatgctggttctgatagaaaggtgtcagaacacacagtgcatcgcagtttgttgcgtatggggctgcgtagccgcagaccagtcagggtgcccatgctgacccctgtccactgccgaaagcgcctacaatgggcacgtgagcatcagaactggaccacggagcaatggaagaaggtggcctggtctgatgaatcacgagttcaaggtgttgacttggcctccaaataggccccacttcgcaacttacaggacttaaaggatctgctgctaacgtcttggtgccagataccacagcacaccttcagaggtctagtggagtccatgcctcgacgggtcagggctgttttggcggcaaaagggggacctacacaatattaggcaggtggtc

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85481 lncRNA downstream 230768 4416656 ~ 4416934 (-) True G68406
TU85456 lncRNA downstream 348018 4298305 ~ 4299684 (-) True G68386
TU85381 lncRNA downstream 517961 4105518 ~ 4129741 (-) False G68336
TU85610 lncRNA upstream 237714 4885925 ~ 4886283 (-) True G68514
TU85633 lncRNA upstream 685881 5334092 ~ 5334383 (-) True G68535
TU85635 lncRNA upstream 749617 5397828 ~ 5398235 (-) True G68537
TU85645 lncRNA upstream 939288 5587499 ~ 5587992 (-) True G68547
TU85674 lncRNA upstream 1009094 5657305 ~ 5703927 (-) True G68572
AMCG00014212 mRNA downstream 41741 4588397 ~ 4605961 (-) True AMCG00014212
AMCG00014211 mRNA downstream 81758 4560163 ~ 4565944 (-) True AMCG00014211
AMCG00014210 mRNA downstream 127303 4511821 ~ 4520399 (-) True AMCG00014210
AMCG00014204 mRNA downstream 258509 4384145 ~ 4389193 (-) True AMCG00014204
AMCG00014206 mRNA downstream 264857 4382603 ~ 4382845 (-) True AMCG00014206
AMCG00014215 mRNA upstream 211046 4859257 ~ 4864318 (-) True AMCG00014215
AMCG00014227 mRNA upstream 996641 5644852 ~ 5655578 (-) True AMCG00014227
AMCG00014228 mRNA upstream 1010861 5659072 ~ 5678472 (-) True AMCG00014228
AMCG00014226 mRNA upstream 1031005 5679216 ~ 5698927 (-) True AMCG00014226
AMCG00014231 mRNA upstream 1178548 5826759 ~ 5843215 (-) True AMCG00014231
TU85055 other downstream 1818558 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 2003795 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 2105005 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 2729520 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 2745087 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 2729877 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 2769387 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 3489120 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 3508018 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 3735074 8383285 ~ 8384224 (-) True G69156

Expression Profile