RNA id: TU85633


Basic Information

Item Value
RNA id TU85633
length 292
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G68535
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 5334092 ~ 5334383 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attgagaacaagggcagtgatgttcagactgtacaatgcactagttagagctcatctggatactgtggacagttctgggctccacacttcaagaaagatatcgctgctctagaggcagttcagaggagagcaaccagacttattccaggtctgaagggaaagtcctactgagagactgagggacctgaaccttttcaccctggaacagaggagactacgtggggacttgatccaagtcttcaaaatcatgaaaggcatcgaccacatcaaaccagaggagcttttccagatc

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04640 Hematopoietic cell lineage
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85610 lncRNA downstream 447809 4885925 ~ 4886283 (-) True G68514
TU85564 lncRNA downstream 685881 4647702 ~ 4648211 (-) True G68474
TU85481 lncRNA downstream 917158 4416656 ~ 4416934 (-) True G68406
TU85456 lncRNA downstream 1034408 4298305 ~ 4299684 (-) True G68386
TU85378 lncRNA downstream 1204351 4127222 ~ 4129741 (-) False G68336
TU85635 lncRNA upstream 63445 5397828 ~ 5398235 (-) True G68537
TU85645 lncRNA upstream 253116 5587499 ~ 5587992 (-) True G68547
TU85674 lncRNA upstream 322922 5657305 ~ 5703927 (-) True G68572
TU85680 lncRNA upstream 342379 5676762 ~ 5678499 (-) False AMCG00014228
TU85691 lncRNA upstream 375435 5709818 ~ 5710080 (-) True G68581
AMCG00014215 mRNA downstream 469774 4859257 ~ 4864318 (-) True AMCG00014215
AMCG00014212 mRNA downstream 728131 4588397 ~ 4605961 (-) True AMCG00014212
AMCG00014211 mRNA downstream 768148 4560163 ~ 4565944 (-) True AMCG00014211
AMCG00014210 mRNA downstream 813693 4511821 ~ 4520399 (-) True AMCG00014210
AMCG00014204 mRNA downstream 944899 4384145 ~ 4389193 (-) True AMCG00014204
AMCG00014227 mRNA upstream 310469 5644852 ~ 5655578 (-) True AMCG00014227
AMCG00014228 mRNA upstream 324689 5659072 ~ 5678472 (-) True AMCG00014228
AMCG00014226 mRNA upstream 344833 5679216 ~ 5698927 (-) True AMCG00014226
AMCG00014231 mRNA upstream 492376 5826759 ~ 5843215 (-) True AMCG00014231
AMCG00014230 mRNA upstream 511905 5846288 ~ 5850922 (-) True AMCG00014230
TU85055 other downstream 2504948 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 2690185 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 2791395 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 3415910 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 3431477 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 2043705 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 2083215 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 2802948 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 2821846 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 3048902 8383285 ~ 8384224 (-) True G69156

Expression Profile