RNA id: TU85635


Basic Information

Item Value
RNA id TU85635
length 408
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G68537
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 5397828 ~ 5398235 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cccattcaccccatcgtgctcgtttggtgtccattaataactaagtgatcaaggatcctatccagtctgtttttgaatgttcccaaattgtctcttcagccacatcgctggggagtttgttcagattgtgacgcctctctgtgtgaagaagtgtctcctgttttctgtcttgaatgccttgaagcccaatttccatttgtgtccccgggtgcgtgtgtccctgctgatctggaaaagctcctctggtttgatgtggtcgatgcctttcatgattttgaagacttggatcaagtccccacgtagtctcctctgttccagggtgaaaaggttcagttcctcagtctctcagtaggactttcccttcagacctggaataagtctggttgctctcctctgaactgcctctag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85633 lncRNA downstream 63445 5334092 ~ 5334383 (-) True G68535
TU85610 lncRNA downstream 511545 4885925 ~ 4886283 (-) True G68514
TU85564 lncRNA downstream 749617 4647702 ~ 4648211 (-) True G68474
TU85481 lncRNA downstream 980894 4416656 ~ 4416934 (-) True G68406
TU85456 lncRNA downstream 1098144 4298305 ~ 4299684 (-) True G68386
TU85645 lncRNA upstream 189264 5587499 ~ 5587992 (-) True G68547
TU85674 lncRNA upstream 259070 5657305 ~ 5703927 (-) True G68572
TU85680 lncRNA upstream 278527 5676762 ~ 5678499 (-) False AMCG00014228
TU85691 lncRNA upstream 311583 5709818 ~ 5710080 (-) True G68581
TU85704 lncRNA upstream 381250 5779485 ~ 5782392 (-) True G68590
AMCG00014215 mRNA downstream 533510 4859257 ~ 4864318 (-) True AMCG00014215
AMCG00014212 mRNA downstream 791867 4588397 ~ 4605961 (-) True AMCG00014212
AMCG00014211 mRNA downstream 831884 4560163 ~ 4565944 (-) True AMCG00014211
AMCG00014210 mRNA downstream 877429 4511821 ~ 4520399 (-) True AMCG00014210
AMCG00014204 mRNA downstream 1008635 4384145 ~ 4389193 (-) True AMCG00014204
AMCG00014227 mRNA upstream 246617 5644852 ~ 5655578 (-) True AMCG00014227
AMCG00014228 mRNA upstream 260837 5659072 ~ 5678472 (-) True AMCG00014228
AMCG00014226 mRNA upstream 280981 5679216 ~ 5698927 (-) True AMCG00014226
AMCG00014231 mRNA upstream 428524 5826759 ~ 5843215 (-) True AMCG00014231
AMCG00014230 mRNA upstream 448053 5846288 ~ 5850922 (-) True AMCG00014230
TU85055 other downstream 2568684 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 2753921 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 2855131 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 3479646 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 3495213 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 1979853 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 2019363 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 2739096 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 2757994 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 2985050 8383285 ~ 8384224 (-) True G69156

Expression Profile