RNA id: TU85659


Basic Information

Item Value
RNA id TU85659
length 891
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G68559
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 5657250 ~ 5704009 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAACAAAGGTGAATTTATTACAGTATAAACTACAGCAGAAATGAGACACacattgtttaatgttgttatgatttattatgaaaaacaaagtaGGCAAAATAAGTCTCTGCAGCATAAACCTCTTAACACTCCCACAAATACAGGAGAATTTTCTCCAGAAAAGGACAATGCTTTTCATCTGGACATGCGCTTCGATGATGcgtttacattttgctttggtttatcttaatgtgtgtgtcttttacTAACATCTTTAGAGCACCTGTATTGAAAGGAAAGTGTTTTGCACAAAGTAGCTTTCTACATTCATTAAACTGGCTTTAAAACTTCCTATGATATGTCAATGCACCTCACAGAGCTGTGGAAGTTCATGAACATACAATTAGCAGTTCCAAAGAAATACTCCTTAGGCACCGTAGTGTGTAAGGCAAGGATACTGTCATAAACATTAACAGGGAAGAATACAACATGTTTCTGCTCAACAGCAACATGGGAAATCATTAATACTGTTCTTAGAATAGGATTTCACTTCAAATTAGCATGGATATTTATTTGAAGCTGATTAGAGCATCGCGTAGAATACAGCCTGACCGAAGAAAGAGTAACACACTGTATACTTCACATGTTAAGGTCATTGCACCATTGTGTGACATAGTTCACAATCTGGCGTCTTTTGAGAGTAACGCCCCTGGGAATGGAACATGGACATGTGAATCCCTGCTTACGGAAAGCACCGGCCGCACCCGCTAAACGAAAGGGAAAACCACTAtggttacagtgagggaaaaaagtatttgatcccctgctgattttgtacgtttgcccactgacaaagaaatgatcagtctataattttaatggtaggtgtattttaacagtgagagacagaat

Function

GO:

id name namespace
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85636 lncRNA upstream 205729 5451288 ~ 5451521 (+) True G68538
TU85603 lncRNA upstream 800020 4857029 ~ 4857230 (+) True G68509
TU85589 lncRNA upstream 871649 4785326 ~ 4785601 (+) True G68497
TU85563 lncRNA upstream 1009037 4647710 ~ 4648213 (+) True G68473
TU85517 lncRNA upstream 1068822 4584474 ~ 4588428 (+) False G68434
TU85700 lncRNA downstream 75369 5779378 ~ 5782386 (+) True G68589
TU85751 lncRNA downstream 193061 5897070 ~ 5956185 (+) True G68623
TU85765 lncRNA downstream 308673 6012682 ~ 6013059 (+) True G68635
TU85767 lncRNA downstream 350526 6054535 ~ 6056347 (+) True G68637
TU85787 lncRNA downstream 369708 6073717 ~ 6110306 (+) False G68649
AMCG00014223 mRNA upstream 13761 5607773 ~ 5643489 (+) True AMCG00014223
AMCG00014222 mRNA upstream 49496 5595455 ~ 5607754 (+) True AMCG00014222
AMCG00014221 mRNA upstream 107152 5508024 ~ 5550098 (+) True AMCG00014221
AMCG00014219 mRNA upstream 526605 5129171 ~ 5130645 (+) True AMCG00014219
AMCG00014220 mRNA upstream 539098 5114650 ~ 5118152 (+) True AMCG00014220
AMCG00014225 mRNA downstream 17888 5721897 ~ 5739921 (+) True AMCG00014225
AMCG00014224 mRNA downstream 51520 5755529 ~ 5774761 (+) True AMCG00014224
AMCG00014229 mRNA downstream 162896 5866905 ~ 5879257 (+) True AMCG00014229
AMCG00014237 mRNA downstream 329428 6033437 ~ 6054435 (+) True AMCG00014237
AMCG00014243 mRNA downstream 530794 6234803 ~ 6239921 (+) True AMCG00014243
TU85565 other upstream 1005286 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 1005286 4649200 ~ 4651964 (+) False G68475
TU84896 other upstream 2946921 2706840 ~ 2710329 (+) False AMCG00014146
TU86015 other downstream 1642186 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 1709631 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 4299049 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 8632849 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 9971622 15675631 ~ 15679788 (+) True AMCG00014490

Expression Profile