RNA id: TU85700


Basic Information

Item Value
RNA id TU85700
length 3009
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G68589
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 5779378 ~ 5782386 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taagtatatacttttatttatactATAAGTTGTAAAAGTAAACATTACACAATTGTTGGATTATGTGTTtcattgaaattgtattattattgtctatATTTGGCACATCAACTCATAAATCCCAACCAGTAAAATGCTctagtatttaaaacaaatcagctAGTTTAGCTTTAATAACTTTGTTAAACATGAACATATGTAATCATAATCCAGCTTGTATTTGGTGTCAGGTAAATATATAGGAATTGGTTTAATTTACTCACACGAAACAGGTTGACTTCTGCAGTTCAGTTGCCTGCGtttcaaaacacttttaaaCACGTGGAGCGAGTCTTGTGTTGGGAGTGCGAGGTAATTGGATGTTGCctgtctgaaacaaaataaaaaagacgaGGAAAAGACAAGTGAAATATTTCGGCACAATATTTAGGCAGGAGCTCCAATGTGATCCTCTGCTATTAATCAAGTGTAAATGCGAAGCTGCGCTGAATGAAGCGTTCCTGGCTTGACTTCCACTTTGCCCCTGTTTGAAGCtcattctgttttgttcttcttttaatCAGATTTAATTCCGCGTGACGTCAGCAATAATAACCTCTTGGCATCGAAGACGAACAAAACATTTCGCTCTCATTTCGCTGCCAACTTTTGAAATCAGATCAGTTATATTCCCAGGGAGACTTCTCATTTTGACCGCCAGTATACAACTTTAAAAAGCCATGCATTTTTTATGCTGCACTTTTAGGCATTcatgaaattatgaaataataattaggaTTTAATTGCTCGTTAACAACAATGTGGCAAAAAGCACACCCAATTGCGCgacaaatcacaaattaatgGACTGCATATATCTAATTCAACagatatgtataatttataaattcctGACACAACAAGCTTGCCTAGCATTCGGGTGAAGCTGAGGTTATTCGAATGATTGTTCCACTAATAAGCTTACTAAATGAATTGTGCATAAGCCCAAAGCAAATCACAACTTCAACTCACCTTCCAACcatcaaactaaaacaaatggaCTTCATGACAGGTTTGCATCAGCTAGAAGAGCAGAGAATCAGATACTGGGATTGGAATTTGCACTTGACGGTTACTGTAGGTTGGGGTCATAGCTTCCAATACTTCTTATTTATCTCGTACCTTAATGTTCAGAGTTTTCATGCAAACCAGTCTCTGTCCTGTAACTCAGTTCAGTCCATTACCTCCCTTACTATAGGACCTGGTTGTTAAGCACTGTAAAGTTTGATCTGTCTAAGCGTTAAATCCACCTCAGAGACGACTAGATGTATTTGCAAATGCTTTCCTGGGCAGATCATTGCAGTAATTCCCTGTATAGGATTTGTAATAATAGTTCAGTTACTTAATTCAAGTCCTTTGGTTTTTCTAGCACGTAGGAGGGATAGCCAGGTATCGAGTCATTTATCTTCAGTTGGcatcaataaacaaatgcacaaaacgTAGACACAACGGCAAAGGACAGAAACTCTATTTGAGTCTGATTCTGACACAATGGAAAGGGAATCCAAAGGTTAGAAGTGCAATTTTTATACAAAACATCGAATCACTTACTTTTCGTTCGTCGAGTACtaatattatatttcacttttctaaagtatattttctatattttaatatttatcatATCAGCACTTTAACCAACAGTTATGATTTTGAAGTAACAGAGTATTTTAAGTAGAAGTATGATGCTGATTTAGGACGACCAATGTGTGGCACTGTGAGTATCGAAAAATTTTccagatgcaaaaaaaaagtcatgctATTGCTGAGTGATTGATATTCATAACTGCGTGTTTAGGAATGGCTCCTACTACAACACGCTTATTACAGGATAATAACACAGGGCCATTCTTCCAAGCTGTTATATAGTACACACTTTGGTCGTTACTATGTAACAACATGGGATTTTGGTGGTTCACACTTACTGTAATTTCCACTATTGCATCAACAGTATTCGCTCATCATGAGTTCAATAAAGTGCCATTCCTGTATCGTAAACCTGTCCATCACACTGatgcaaaaaaagaagaaactgtTCCATTCTTGTGTTGAAATTGTTTAAGTTTTAAACCGGGCTGTTCGGCCTTCGAAGGATGTGTTTTCTGGTGTTATATTCTGTGTGTAGTCTTTATTTCAAGAGACATTGATGTGCAACTATGTGTCCGTTATTTCCTGGGTTGTTTCAGACTATATCCACTTTTACCTCctctttctcaaaataaaatatccacaTGAATTATCAGCACCTCGTTttctaagaaaataatattaatgttgcCATAAATGTTCTATATAAATCAGCTATAACAGCTTATAACAGtagttttcaaaatatataaaatgctttaCTTTTAAGTAAATGTAGTAAACATAGGTAATATAGTCCCAATTTCCTTAACTGCAACATTGAGCTCTATATTCTATTTCCTGctaatattttgatatttttttattaaagcagaTTGTACAGTAACCAGCAACAAgggaaatgaaaacacacatccTTTATTTTGACACGGAGGTAAAAGGTTGTATTACAGAGGTCTGAGTATCATTCTGAGTGTATCTTGTGTCAAGTAGCCATAGacatatatttgtgtatctgtACTACTATCTACATATACACTGTTGATTCCTGGTCCACCTCTCATTGCTCTTCAGACACACCAATCCAGTCCAGGACTGTGATGTTTCTCCGGCtatggttttgtgtttgtatgcagTTAATGTTCCCtacaatgtacaaaaaaaacaaacaaacatacacgaCGATTTTGCCGAAGAGACGCTGAAACACACTATCCTCCTGTCCACGTTGTCAGTCCCCACCGGCTTGTGTCCCAGTGGTGGAGTCGTACCAGTGGTTATTTCTGTCCGTCGACCCCGGCCCTTCGTCTCTCACAGTTCGTCACAGCGAATGTCATTGTTCTTCGTCGACGGGTGAGTGTTGTTGTGTTCGTGCCaggccgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85659 lncRNA upstream 75369 5657250 ~ 5704009 (+) True G68559
TU85636 lncRNA upstream 327857 5451288 ~ 5451521 (+) True G68538
TU85603 lncRNA upstream 922148 4857029 ~ 4857230 (+) True G68509
TU85589 lncRNA upstream 993777 4785326 ~ 4785601 (+) True G68497
TU85563 lncRNA upstream 1131165 4647710 ~ 4648213 (+) True G68473
TU85751 lncRNA downstream 114684 5897070 ~ 5956185 (+) True G68623
TU85765 lncRNA downstream 230296 6012682 ~ 6013059 (+) True G68635
TU85767 lncRNA downstream 272149 6054535 ~ 6056347 (+) True G68637
TU85787 lncRNA downstream 291331 6073717 ~ 6110306 (+) False G68649
TU85780 lncRNA downstream 324655 6107041 ~ 6110306 (+) True G68649
AMCG00014224 mRNA upstream 4617 5755529 ~ 5774761 (+) True AMCG00014224
AMCG00014225 mRNA upstream 39457 5721897 ~ 5739921 (+) True AMCG00014225
AMCG00014223 mRNA upstream 135889 5607773 ~ 5643489 (+) True AMCG00014223
AMCG00014222 mRNA upstream 171624 5595455 ~ 5607754 (+) True AMCG00014222
AMCG00014221 mRNA upstream 229280 5508024 ~ 5550098 (+) True AMCG00014221
AMCG00014229 mRNA downstream 84519 5866905 ~ 5879257 (+) True AMCG00014229
AMCG00014237 mRNA downstream 251051 6033437 ~ 6054435 (+) True AMCG00014237
AMCG00014243 mRNA downstream 452417 6234803 ~ 6239921 (+) True AMCG00014243
AMCG00014253 mRNA downstream 949238 6731624 ~ 6732517 (+) True AMCG00014253
AMCG00014259 mRNA downstream 1257368 7039754 ~ 7046875 (+) True AMCG00014259
TU85565 other upstream 1127414 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 1127414 4649200 ~ 4651964 (+) False G68475
TU84896 other upstream 3069049 2706840 ~ 2710329 (+) False AMCG00014146
TU86015 other downstream 1563809 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 1631254 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 4220672 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 8554472 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 9893245 15675631 ~ 15679788 (+) True AMCG00014490

Expression Profile