RNA id: TU85765


Basic Information

Item Value
RNA id TU85765
length 378
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G68635
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 6012682 ~ 6013059 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccatcgtgctcgtttggtgtccattcataactaagtgatcaaggatcctatccagtctgtttttgaatgttcccaaattgtctcttcagccacatcgctggggagtttgttcagattgtgacgcctctctgtgtgaagaagtgtctcctgttttctgtcttgaatgccttgaagcccaatttccatttgtgtccccgggtgcgtgtgtccctgctgatctggaaaagctcctctggtttgatgtggtcgatgcctttcatgattttgaagacttggatcaagtccccatgtagtctcctctgttccagggtgaaaaggttcagttcctcagtctctcagtaggactttcccttcagacctggaataagtctggttgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85751 lncRNA upstream 56497 5897070 ~ 5956185 (+) True G68623
TU85700 lncRNA upstream 230296 5779378 ~ 5782386 (+) True G68589
TU85659 lncRNA upstream 308673 5657250 ~ 5704009 (+) True G68559
TU85636 lncRNA upstream 561161 5451288 ~ 5451521 (+) True G68538
TU85603 lncRNA upstream 1155452 4857029 ~ 4857230 (+) True G68509
TU85767 lncRNA downstream 41476 6054535 ~ 6056347 (+) True G68637
TU85787 lncRNA downstream 60658 6073717 ~ 6110306 (+) False G68649
TU85780 lncRNA downstream 93982 6107041 ~ 6110306 (+) True G68649
TU85783 lncRNA downstream 93982 6107041 ~ 6110306 (+) False G68649
TU85785 lncRNA downstream 93982 6107041 ~ 6110306 (+) False G68649
AMCG00014229 mRNA upstream 133425 5866905 ~ 5879257 (+) True AMCG00014229
AMCG00014224 mRNA upstream 237921 5755529 ~ 5774761 (+) True AMCG00014224
AMCG00014225 mRNA upstream 272761 5721897 ~ 5739921 (+) True AMCG00014225
AMCG00014223 mRNA upstream 369193 5607773 ~ 5643489 (+) True AMCG00014223
AMCG00014222 mRNA upstream 404928 5595455 ~ 5607754 (+) True AMCG00014222
AMCG00014237 mRNA downstream 20378 6033437 ~ 6054435 (+) True AMCG00014237
AMCG00014243 mRNA downstream 221744 6234803 ~ 6239921 (+) True AMCG00014243
AMCG00014253 mRNA downstream 718565 6731624 ~ 6732517 (+) True AMCG00014253
AMCG00014259 mRNA downstream 1026695 7039754 ~ 7046875 (+) True AMCG00014259
AMCG00014260 mRNA downstream 1037277 7050336 ~ 7054907 (+) True AMCG00014260
TU85565 other upstream 1360718 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 1360718 4649200 ~ 4651964 (+) False G68475
TU84896 other upstream 3302353 2706840 ~ 2710329 (+) False AMCG00014146
TU86015 other downstream 1333136 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 1400581 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 3989999 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 8323799 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 9662572 15675631 ~ 15679788 (+) True AMCG00014490

Expression Profile