RNA id: TU85780


Basic Information

Item Value
RNA id TU85780
length 2255
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G68649
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 6073717 ~ 6110306 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GacaatatatagattttatttaatacttgaATTGCACAACACACACTACAACAACTCAAGACAGTGAGCAGTGTCGAGTACACAAACAATTGCAAGACAGCGGAACAgctttcaaacacaaaacatgttacGTGACATCATCTGCGCTGAGAACATGCATACAGTTCAGTAACAATGAATCCATTCTGCAATAGTCCTGCATTCAGGGAAAGGACTGATATTGCCCACTAtcattagtattttattataatgtcgATGCGTGTCATTGTGTCACACATTCACACCTATTTGAATTAGTGTCGGCGGCAGCTGGCAGTGAAAATAAACCACGAGCAAATGATTAGACTATAACAAATGAGTGAGACATCAATAAGACACAAGTTTGTACTGTTTTGCATAATACGCTGACATTTTTCATCCTGGCACTGGGATGTGTGTACCTGTACTCAATCTACACAACAGGCAGTTTAAATACTGTCAGCTCCCGAAATCATTCAACTAAACTGGTGATTGTcactgtgtatttcttttttggCTCTTCTTGTCTTCATCATTATCCTACGTCCCCTGATGTTTACCCAGACTACGAACTCTCTTAATGGGTAATTCTCTTGATGTTTTCTACAGAAACACACTTATGATTATAATTAAGTGTAGCTTTAGTCCATGACAGGTAAACCATACTTGATGTTggctatttaaaaagaaaaaaaggcttaaaatcctgagaatttgtatttgacattttgtatGATTTGAATGTCTCCACCTCCAGATGCTTTCCTGCTCTGACATGCAGAAGTAGATTCCCAGCACAGCTGGAGGTGAAGACGTCTCTACATCAATGGGGGTTTAACGGTTTGGATTCATTACTAAGGCAGTTTCTGTCGAATGCTAAAGTACAAATATAACTTTGACCACCAAAACACAGGCTGCCGAAACACAGCAGGCCGCGCTCACACAGTATTGCTAATAGCCACTAGGCAATAGATATAAAACTGATAAGGCACAAGAAACAAAGAGGGTATAAACAGATATAAAACCATGCAGGAAAAATAGCAGTTTATAAAGATATAGATAGAAACAGTCTACTTTAAGAGGCACTAATAGATAATGTGTCATATTTAGAGGACAGACGTCCAgtccattatttttctttgggtGTTACAAATCTCTgcgatacacacacactctctcactctctatctcactctcacacacacactctctcacacacacacacacacacacactcgctctcacactctctctctcactctcacacacacacacacacactcgctctcacacactctctctctctcgctctcacacacacacacacacactcgctctcacacactctctctctctcgctctcacacacacacacttactctagctctcactctctgtcacacacacacacacactctctcgctctcacacacacacacacacacacactctctctctcgctctctcacacacacacacacacactctctcgctctctcacacacacacacactctagctctcactctctgtcacacacacacacactctctctcgctctcacacacacacacacacacacacaaactcgaCAGTGAGGTACAAGTGAACCCCCTTTGTGTTTTCCCTTGACTCTATATGTTGCATTAGTTTCTCACAGTCCGTAGCCGGTTATGTATGCAAGCgctacagattaaaaacaacactcaCAATTGGCATCTCTTTTGATGCCTCACTGGATGCATTACTTGTatgcaacaaaatatatatatatatatatatatatatatataaaaaaaaaacaggcaaacataaatgtatatcgggcgttttagttttttcttcttttcagatTACATAAGATAAATGTTTTTGCACCAAGTTGGGGTGAAATAGTAAGGCCCCTAGTGTAGACAGGACTACGTGTAATCTGCCCGGCTGAAAAATGTATgaccttattttaaatgtgttctttatttcattcctctccctcccacacacaaaaaactgacAGACAATCCGTGCTTCTTTGACGTGTGATCTGAAGAGGACTGTGCGCCAATGCGAACCTCCAGCTCGAGGCCGGTGGTCTCCGACTGGACGGTCAGCGCAGCGCTGGAGGGGCTTTACTTCCTGCCCAGGGTCTCCGCCAGTTTCTTCAGCCTCTTCTTCAGCTCCAGGGGGAACTTCTCGTAGCACTTCTTGCACACCGGCTTCATGTCAAACTCCACAAACTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85767 lncRNA upstream 50694 6054535 ~ 6056347 (+) True G68637
TU85765 lncRNA upstream 93982 6012682 ~ 6013059 (+) True G68635
TU85751 lncRNA upstream 150856 5897070 ~ 5956185 (+) True G68623
TU85700 lncRNA upstream 324655 5779378 ~ 5782386 (+) True G68589
TU85659 lncRNA upstream 403032 5657250 ~ 5704009 (+) True G68559
TU85805 lncRNA downstream 2350 6112656 ~ 6114964 (+) True G68665
TU85846 lncRNA downstream 93872 6204178 ~ 6206576 (+) True G68686
TU85863 lncRNA downstream 134596 6244902 ~ 6247049 (+) True G68698
TU85895 lncRNA downstream 602865 6713171 ~ 6714821 (+) True G68728
TU85912 lncRNA downstream 633557 6743863 ~ 6744111 (+) True G68738
AMCG00014237 mRNA upstream 52606 6033437 ~ 6054435 (+) True AMCG00014237
AMCG00014229 mRNA upstream 227784 5866905 ~ 5879257 (+) True AMCG00014229
AMCG00014224 mRNA upstream 332280 5755529 ~ 5774761 (+) True AMCG00014224
AMCG00014225 mRNA upstream 367120 5721897 ~ 5739921 (+) True AMCG00014225
AMCG00014223 mRNA upstream 463552 5607773 ~ 5643489 (+) True AMCG00014223
AMCG00014243 mRNA downstream 124497 6234803 ~ 6239921 (+) True AMCG00014243
AMCG00014253 mRNA downstream 621318 6731624 ~ 6732517 (+) True AMCG00014253
AMCG00014259 mRNA downstream 929448 7039754 ~ 7046875 (+) True AMCG00014259
AMCG00014260 mRNA downstream 940030 7050336 ~ 7054907 (+) True AMCG00014260
AMCG00014261 mRNA downstream 963018 7073324 ~ 7073602 (+) True AMCG00014261
TU85565 other upstream 1455077 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 1455077 4649200 ~ 4651964 (+) False G68475
TU84896 other upstream 3396712 2706840 ~ 2710329 (+) False AMCG00014146
TU86015 other downstream 1235889 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 1303334 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 3892752 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 8226552 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 9565325 15675631 ~ 15679788 (+) True AMCG00014490

Expression Profile