RNA id: TU85863


Basic Information

Item Value
RNA id TU85863
length 1990
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G68698
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 6244902 ~ 6247049 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCAAATAAACAACCCCCAAATCAAACtatgaaaagacaaacaaaaacaaagcaagaacgAAACACACCAGTGAACAAATCTGTGACATGACAACGCAGCGGGGGACTCACGTTGGACGGCTTCAGTTTATTAATGATGGTGGTCTTGCCGCTGTTGTCCAGCCCCAGGCACAGGACGTGCACCTCTTTCTTCTTAATGCCCAGCCACCCGGCCAGCTTGTCAAACAGCCCCATCAGCCCTCCTCACCGGAGCTCGCCTGCTTAGAACTGCAGTGTTATTTTACACAGGGTAGTGCAGGACTGGTGCTAATCCAGATCTGCGAGGTTTGGTGATGGTCATCACTTCCTCTCGGCCACTGACTAACCCTCGCCCTAGAGTCGAGCTGCACTGTGCATTAAAGCTGTGGAATCCCCCAGCCGGGACCCATCGCTAAACCGCTTACTGAGCTCGTCCTGAACCGGCAGCCGATTGGCCAGTGTGATTGGCAGGACGAGACATCAGGAGTGTCTGCATACAGGGATTTACAGTCTGGAAAGAaccgtgtgtgagtgtgtgtgtgcgtgtcagtgagtgtgtttgtgtgtgtgtgtgtgtctatctgtgagtgtgtctgtctgtctgtctgtgtgtgtgtgtcagtgtgagtgcatgtgtgtgaaagtgtgtgtgtgggtctgtgtgtgtgtgtctagctgtgagtgtgtctgtgtgtgtgtgagtgtgtctatctgtgagtgtgtgtgtgtgcgtgtcagtgagtgtgtctgtgtgtgtgtgtgagtgtgtctatctgtgagtgtcagtgtgagtgcatgtgtgtgaaagtgtgtttgtgtgtgtctatctgtgagtgtttctgtgtgtgtgtgtgtgtctgtgtgtgtgactatctgtgattgtgtctgtctgtctgtgtgtgagagaagagtgtgtgtgtgtcagtgcgtgtgcgtgtagAAATACAACAGACGCTAAGCCGTTGGGAAACCTGTGTTATTTAAAGCACAAGGTGTATAAAAATACACTGGACtccacacagtacagtacatgaTGATAAATGCAGGAAGTTCCTGTAACGGGATTTGAACCCCCCAGGCCACTGTACTGAACACAGACCAAGAGCAGCCTTTAAACAGCAGCAAATAATGACAGTGGTGCTGTACCTGATAGAAATAATACACCTGAACtgaatacaacaacaacaacaacaacaacaacaacaacaacaacgtctTACTAATGTCTTCCTCAATGTTGCGCCggatgtataatataataattatagcaATTGCATTTACAGTGTCTGATACACTAGTAATCAGTCGCACAGCTTAAACAACGCATGCGCACGTCGCATTACCAATAACACCGATAATAAATCAGATCAGCGCAGTTCTATCATCGATTACCCACAATACCCCTGCAAAGCACTAACTATAATAAACACGACCCGCTGTCTGCCTTAATTACACTTTATTTACTTACACCGATAGTCACctgcttattttaatttccccgGCATAACATGTGGGACACGAGTAAACAGTGATGCATTCTCTGCCATGTTTCCTAACCACCCTGTCCCGTGGTGCAATAACTGGGCTCGGGCTCTGTGTAAGGCCGGTGTAAACTGTGCGTTTGTGCTCACCTGCTACTGGAGACTCTGAGCTCCCTCGGCCTTCCGCAGCGGCGCAGCCTCGCCCTGTCGTGCCTCGGCTCCCCGGCTGCCGGCCTCTCCCCCGCGGGCCGCCGCCTCCACGCTAGACCCCTAACCGCAGATAAAGAGCCGAGACAGCTGGCCGTCCGCAGGCGCCGGCGTGTGAGCTGCAGGGCCGCCGTGCCTCTCCGTCCTTCAGCCGGGATATGTACAGCGCGTTGCTGCGGAGACCTGCACTCCGCCCTGCAGCGCCTCCATCCGGGGAACCGGAGGGCTGCAGAGCGCCCCGCAGCGCCGTCTCCGCACGGCGTGCACCGGGTTCATGCACCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85846 lncRNA upstream 38326 6204178 ~ 6206576 (+) True G68686
TU85805 lncRNA upstream 129938 6112656 ~ 6114964 (+) True G68665
TU85783 lncRNA upstream 134596 6107041 ~ 6110306 (+) False G68649
TU85895 lncRNA downstream 466122 6713171 ~ 6714821 (+) True G68728
TU85912 lncRNA downstream 496814 6743863 ~ 6744111 (+) True G68738
TU85947 lncRNA downstream 809658 7056707 ~ 7058319 (+) True G68771
TU86061 lncRNA downstream 1222029 7469078 ~ 7469310 (+) False AMCG00014272
TU86116 lncRNA downstream 1378939 7625988 ~ 7626404 (+) True G68904
AMCG00014243 mRNA upstream 4981 6234803 ~ 6239921 (+) True AMCG00014243
AMCG00014237 mRNA upstream 190467 6033437 ~ 6054435 (+) True AMCG00014237
AMCG00014229 mRNA upstream 365645 5866905 ~ 5879257 (+) True AMCG00014229
AMCG00014224 mRNA upstream 470141 5755529 ~ 5774761 (+) True AMCG00014224
AMCG00014225 mRNA upstream 504981 5721897 ~ 5739921 (+) True AMCG00014225
AMCG00014253 mRNA downstream 484575 6731624 ~ 6732517 (+) True AMCG00014253
AMCG00014259 mRNA downstream 792705 7039754 ~ 7046875 (+) True AMCG00014259
AMCG00014260 mRNA downstream 803287 7050336 ~ 7054907 (+) True AMCG00014260
AMCG00014261 mRNA downstream 826275 7073324 ~ 7073602 (+) True AMCG00014261
AMCG00014267 mRNA downstream 982024 7229073 ~ 7237562 (+) True AMCG00014267
TU85565 other upstream 1592938 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 1592938 4649200 ~ 4651964 (+) False G68475
TU84896 other upstream 3534573 2706840 ~ 2710329 (+) False AMCG00014146
TU86015 other downstream 1099146 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 1166591 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 3756009 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 8089809 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 9428582 15675631 ~ 15679788 (+) True AMCG00014490

Expression Profile