RNA id: TU85889


Basic Information

Item Value
RNA id TU85889
length 222
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G68722
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 6534480 ~ 6534701 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcttcaaaatcatgaaaggtatcgaccacatcaaaccagaggagcttttccagatcagcagggacacacgcacccggggacacaaatggaaattgggcttcaaggcattcaaggcagaaaacaggagacacttcttcacacagagaggcgtcacaatctgaacaaactccccagcgatgtggctgaagagacaatttgggaacattcaaaaacagactggat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85829 lncRNA downstream 426122 6107039 ~ 6108358 (-) False AMCG00014241
TU85837 lncRNA downstream 458570 6073171 ~ 6075910 (-) False AMCG00014241
TU85822 lncRNA downstream 471984 6059496 ~ 6062496 (-) False AMCG00014241
TU85835 lncRNA downstream 478149 6054111 ~ 6056331 (-) True G68680
TU85711 lncRNA downstream 708551 5825504 ~ 5825929 (-) True G68595
TU85891 lncRNA upstream 145324 6680025 ~ 6680288 (-) True G68724
TU85931 lncRNA upstream 455902 6990603 ~ 6990867 (-) True G68757
TU85943 lncRNA upstream 509424 7044125 ~ 7045812 (-) True G68767
TU85949 lncRNA upstream 519230 7053931 ~ 7054306 (-) True G68773
TU85950 lncRNA upstream 520076 7054777 ~ 7058319 (-) True G68774
AMCG00014252 mRNA downstream 119644 6399468 ~ 6414836 (-) True AMCG00014252
AMCG00014250 mRNA downstream 194071 6334515 ~ 6340409 (-) True AMCG00014250
AMCG00014251 mRNA downstream 231734 6285340 ~ 6302746 (-) True AMCG00014251
AMCG00014248 mRNA downstream 258980 6263950 ~ 6275500 (-) True AMCG00014248
AMCG00014245 mRNA downstream 280599 6252371 ~ 6253881 (-) True AMCG00014245
AMCG00014255 mRNA upstream 175518 6710219 ~ 6717932 (-) True AMCG00014255
AMCG00014254 mRNA upstream 183618 6718319 ~ 6739267 (-) True AMCG00014254
AMCG00014256 mRNA upstream 218158 6752859 ~ 6755633 (-) True AMCG00014256
AMCG00014257 mRNA upstream 279480 6814181 ~ 6860542 (-) True AMCG00014257
AMCG00014258 mRNA upstream 352325 6887026 ~ 6888090 (-) True AMCG00014258
TU85055 other downstream 3705336 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 3890573 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 3991783 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 4616298 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 4631865 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 843387 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 882897 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 1602630 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 1621528 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 1848584 8383285 ~ 8384224 (-) True G69156

Expression Profile