RNA id: TU85947


Basic Information

Item Value
RNA id TU85947
length 1613
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G68771
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7056707 ~ 7058319 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGGGAAGTGTGAGCACGTGCAGAACCCTCTGAAGATCAGTCGGACCTGTGCTTAGAACGCAAGAGCAGTATGGTCTGGTGTGGACCACTGGGAAGGGTTGtacttaaagaaacaaacaaaaaagcaacacacaaaacaacccCCAAGTGGACTTTGCTTCTCTGGGGTGTGAACTTCATTCCAAGCTCTCCTAGTGGGCCTGTCTGCTTAGGAATGCATTGGAGAGCATCGTGCCGTATCCCCCGGGGTCTGTCTGAGCTCCCGGCCGACTGGTTCTGTCCCCACTTGAAAGCTGGACATccggtctttttttttttttttttttgcatgtgaCTGAATTCAGCTTCACATTGGAAGTGAGAACAGTTCCAGGCTCTTTCCTGGTGGAGACCATGTGTGGTGATGCTCCGCTCTCCCAGCCTCCTTCCCCCGTGGCGGGTGGCGTCTCCCAGGGCCTCTGGACACCCATACAGCCCAAACCACAAAGAAACGCATCCTGCACATAGGTTTCATGGATACACTGCGATTCGCCAAAAATAGAACCCACCAATACATCTTGTCAACATAGAGGATGTCAATTTTAAAGTATAAGAACGTATGTGTAAAGTTTAAACCATGACCTATGTTTTAGGTATATCGATATGTCAATGTGTGCcagaaattgatttaaatagaCATTATAGACACACGTATGTTAAAATCTATACCTTTAGATTTCCAGAGGTTTCAATATGTGACTATTTGTGCAGAAAGGCCATCTATTTGTGAAATGTTCTCTCAGGATGTGTCTTTATATTCCTCTCGCATGGGAATGCAGGTCCAGGGGCCGGTAAGGGAAGGCAGTCTTATTTAACAGTGTCTGTTGACGGTGCATGTATGTCTTACAATCGTCTGTGTTCACTGCATGTTCAATGGTATGGTGATGATTTGAGGACTAGATCGAACCCAAACCCTCTTAGGATGTCACTCAGCCTGTTCCCAGATAGTGCCTTTGAAACAACCCTGCATGACAGTGAATACCTCGTTAACATTAGCCCCTCTTTAGGAACAATTAGAAACGATTGCATagttttccctgtgtgtctgtgatttgCATAGGAaccttaattgtgttttttgatcCCACGCATTTTCCCTCCCTGCGGTTATATAACCGAGCCGATGCCCTGAACTGAGTGATCggggttttattttgattacacACAATGAGTGTTTTGCCTGTGGTATTTGCTAATCAGGTCTCAAGTGTTAACAATGCTAGTTTCACACTTTTAAGGAggtctgtatgtatttatttttatataaaggagagacatttgtataaattgtgcaaaatgaaaatatgctaAGACACAAAAAACTTCCACAGATACCAGGCAAATACTTCTTGCTtctagtgtagtgttgtgtagatTTCTTCTTCAAATATCTTATCAGGAAACATAAAACGACTGTGATGCagactttttaaacaaaatgttatcaCTGTAAACATGCTCGTGCATGGAGTATAATCGACATATCTTTACCCTTAAGCAATACATTTatcacaatgcatttaaaaaaatatatgcaatgatgatctgaaataaatatggatttgaaCACTGA

Function

GO:

id name namespace
GO:0035725 sodium ion transmembrane transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85912 lncRNA upstream 312596 6743863 ~ 6744111 (+) True G68738
TU85895 lncRNA upstream 341886 6713171 ~ 6714821 (+) True G68728
TU85863 lncRNA upstream 809658 6244902 ~ 6247049 (+) True G68698
TU85846 lncRNA upstream 850131 6204178 ~ 6206576 (+) True G68686
TU85805 lncRNA upstream 941743 6112656 ~ 6114964 (+) True G68665
TU86061 lncRNA downstream 410759 7469078 ~ 7469310 (+) False AMCG00014272
TU86116 lncRNA downstream 567669 7625988 ~ 7626404 (+) True G68904
TU86203 lncRNA downstream 816208 7874527 ~ 7874742 (+) True G68982
TU86229 lncRNA downstream 956425 8014744 ~ 8015003 (+) True G69006
TU86247 lncRNA downstream 1074969 8133288 ~ 8136210 (+) True G69023
AMCG00014260 mRNA upstream 1800 7050336 ~ 7054907 (+) True AMCG00014260
AMCG00014259 mRNA upstream 9832 7039754 ~ 7046875 (+) True AMCG00014259
AMCG00014253 mRNA upstream 324190 6731624 ~ 6732517 (+) True AMCG00014253
AMCG00014243 mRNA upstream 816786 6234803 ~ 6239921 (+) True AMCG00014243
AMCG00014237 mRNA upstream 1002272 6033437 ~ 6054435 (+) True AMCG00014237
AMCG00014261 mRNA downstream 15005 7073324 ~ 7073602 (+) True AMCG00014261
AMCG00014267 mRNA downstream 170754 7229073 ~ 7237562 (+) True AMCG00014267
AMCG00014266 mRNA downstream 219803 7278122 ~ 7285235 (+) True AMCG00014266
AMCG00014273 mRNA downstream 386697 7445016 ~ 7455956 (+) True AMCG00014273
AMCG00014272 mRNA downstream 406184 7464503 ~ 7482560 (+) True AMCG00014272
TU85565 other upstream 2404743 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 2404743 4649200 ~ 4651964 (+) False G68475
TU84896 other upstream 4346378 2706840 ~ 2710329 (+) False AMCG00014146
TU86015 other downstream 287876 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 355321 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 2944739 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 7278539 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 8617312 15675631 ~ 15679788 (+) True AMCG00014490

Expression Profile