RNA id: TU86247


Basic Information

Item Value
RNA id TU86247
length 1816
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G69023
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8133288 ~ 8136210 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAACTGTTAACCCTGAGGAGTTTGTGGGAGTCGGGATACCAGGTCATTGTTTCTTATGAAGACGTAGAAGCAGAGCAACATCCAGAGTTATGGCCGGCGATCCCCTATTGGTGGGCAAACAAACTCGACGCCAAAGCTGTGGTTCAGTTTCTGCAGCAACGCAAGCATTCAGGACGCCCAGGGGGATTTTTTGTGGCTGGGCTGAACCTGACGGCAGACACGCAGTATATTGTGCGTCACCCTTCACAGTCCATCCGCACTCTCACGCTGCACAACTACGGCTATCTGGCAGCCTGGCTGCAGAAACAGAGCCCTGGGCCCGACCCAGGCTGCCTCAACATCATTGCTGGAGACTTCATCGGGTCGGTCCAGTTCTGCTCAATTGTCATATCTCTGAACAAGAAGCTGATACAGGCGGAACCAGAGCCCACTAACAACATgcattgaattaaatatgaaaaatacgACTGGAAATACACCTCCATGAGTATGGAAAAAAGcagaaactatatattttatttttatataagtatTGATGAACTCCAGTACACTGTTCTACTTTTCAGGTTTATTCCTACCAAGATCCtcataaatatgtatgatttGTCATGAATGAATGGGAGAAGTgtgcaatgaaaagaaaataatttaaaccactttattttgtatacaaaatacatgtataatctTTACTGTAAACTGCTTAgctattttatatacattaatctTTGAAAGGTTACAGCACAATGAAACGTAACCAGTATTTCACAAAGTCCCTGAATgtgggtaaaaaaacaaaaacacttaatgcatgaaaaataaataaatgtggaagAATTCTGATCACACTGATGTTGACAAGTGTGCCGATgaatcatccaattaacatgAGGCTTCAACACAGGGATTCTGGGTTACTAGTCGATGCCAGAGCTGCTAGTACTGGAATAGCTTCCTGTATCGCCCCCACGATGCATTGCTCATAATGACCTTGACGTCAGCGGCTCCTTCTTCTGGCAGAACCACCACCTCCTGCACCGTGGCCTCCTTGTACAGCCAGCTTGTTATGGTCTGTTTGGATGGGATGCAAAGCTGGACTGATACATTTGCCACCATAACATGTAAAGCGATGTGTTCTGCTTAGGGAAACACACTATGTCAGTCAACTAGGTGGAGCACAGCTACAGCAGTGTACCTATGAAAATAACCtgggtattttgttttcagtcgaTTCCAGGCTAGAGAGGGAAGAGAAGGGCAAACAGAAGACATTGACACAGGCCTAAAGCTGTGAAATTCAAATTCACTCTAGTCATGCAAAAACAGAATTGTTTACAAGACCTTCCAGAATTTCATGCTCAGAGTTGCTCCTTGTTTTACACAAAGCCATACTGCAGCAGCAGGGAAGTGTCCAGAGAAGGGCATCCACAATGGTCATACATTATCCTTGAGGTAAATTTGGCATAGGCTTTACAGGCAGGGTGGAAATAAAAGTTGTGCAAGATCATTGGTTACCTTAACTGAGCGCTGTTGAGATCCACCTTAATTGTCAGAATTTTCTTCCCCGTGGTTTTCAGGATGGCTTCTTCAATTCGGCTTCTCAGATCATCCAAGCCGTGCTCTTTCAGTGCTGATATGGCCAGTGTGTTTGGTTCAGTGGGCTGATAACTGAAACccaagcagaaaaacaaactaattttaaGCACACATACAGAAGGCTGTACTTTTCATTTGTAGCATTAGATCCTATGTTTGCTTAAAATGAATCAAGCAAAACCACacaaagctcctctggtttgatgtggtcgatgcctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86229 lncRNA upstream 118285 8014744 ~ 8015003 (+) True G69006
TU86203 lncRNA upstream 258546 7874527 ~ 7874742 (+) True G68982
TU86116 lncRNA upstream 506884 7625988 ~ 7626404 (+) True G68904
TU86061 lncRNA upstream 663978 7469078 ~ 7469310 (+) False AMCG00014272
TU85947 lncRNA upstream 1074969 7056707 ~ 7058319 (+) True G68771
TU86463 lncRNA downstream 598113 8734323 ~ 8735939 (+) True G69206
TU86492 lncRNA downstream 754376 8890586 ~ 8890834 (+) True G69232
TU86614 lncRNA downstream 1230327 9366537 ~ 9376350 (+) True G69326
TU86679 lncRNA downstream 1765240 9901450 ~ 9910048 (+) True G69384
TU86698 lncRNA downstream 1838214 9974424 ~ 10028351 (+) True G69400
AMCG00014294 mRNA upstream 1495 8128204 ~ 8131793 (+) True AMCG00014294
AMCG00014292 mRNA upstream 6193 8120375 ~ 8127095 (+) True AMCG00014292
AMCG00014290 mRNA upstream 130010 8000090 ~ 8003278 (+) True AMCG00014290
AMCG00014289 mRNA upstream 277937 7845556 ~ 7855351 (+) True AMCG00014289
AMCG00014288 mRNA upstream 337906 7783729 ~ 7795382 (+) True AMCG00014288
AMCG00014293 mRNA downstream 24198 8160408 ~ 8161280 (+) True AMCG00014293
AMCG00014299 mRNA downstream 68612 8204822 ~ 8250935 (+) True AMCG00014299
AMCG00014306 mRNA downstream 127226 8263436 ~ 8321739 (+) True AMCG00014306
AMCG00014307 mRNA downstream 206791 8343001 ~ 8382284 (+) True AMCG00014307
AMCG00014308 mRNA downstream 249955 8386165 ~ 8401359 (+) True AMCG00014308
TU86046 other upstream 716694 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 783821 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 3481324 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 3481324 4649200 ~ 4651964 (+) False G68475
TU84898 other upstream 5422959 2709024 ~ 2710329 (+) True AMCG00014146
TU86705 other downstream 1866848 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 6200648 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 7539421 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 7539421 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 7993315 16129525 ~ 16132802 (+) False AMCG00014508

Expression Profile