RNA id: TU86463


Basic Information

Item Value
RNA id TU86463
length 1617
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G69206
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8734323 ~ 8735939 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctcACTTTACTTGCTTGGCACTATAAACAAGACATGGTTTACATCACATACAGGAATAAAATGTGCACATCAGACGGGCATCTTTTGTTTAAcaactgtaatatattataattatttcccaaATAAAATGCCTGTGAAGAAAATTACAAAGTGAGGAGAAGATATTGACCTGCTCTTGaggaaattcaaattcaaagcatGTCTCTCTAAAAAGCTTTTATActctttccaaaaataaaaactgaagacCCTACTCACAAAATATATCAGgcatgtatttattgctttagTAACATTATGCTGAAAATGAGATTGGCACATCAGTTTACTAAAaattaacaaagcaaaaacattttagtgtcAGAGTTTCATGTGCACCTTCCACTTTACACAGACGTTCATGGTTTAGAGCTCAGAGAGCCTTgaagtttattatttacataacgGTTCCCACTTTAAAGCTTCAGACGTCGGCATGAAAAAGGCTTAGCTTTTGTTTccacccccttccctccctctaaATACCTGGTACCACTTTTCATCCAATGAACTTAATCAGCACATTTATATGCTGGCTCCTGGAGGACACAGTTCAGCTTTACATCTCACAGCCTGATGTCACCAAGGATATCATTATTAAGTAGTGCTTTATTGGCGAAGAGTAATTAAGCCTGGATAATTATACCACCCAAAATCtatgaaaacacaaagctgaGTAAAGCACTTTTTGCAGATCCCTCAAGACAAATCATATATCTGACATCGCAAAATGGAGCCAGTATCCCTCCTGTACCACTGTTCACATGCACACTTTTGGTTGGTTGGACCCTTTCAGGTGATCCAGTGAGACCCATGCCTGTAGGTGTATGAGATGCAGACAGTACTTTACTTTGCCTGAAATGATCACATCCTTATACCCTTATTGTCTTTCATAGTAAACAATACTGCACCACAGGCTAATCTGGAGCCAATACTTGATCCTAGGCCAGGCATAacattttgcagaaatgcatttgACCCTTATTTTCTCatacaaaaacacttaaaatcaaaacaaaaaagcctcaCATGACCTTTCCAGTTCAGGAATGCAACATTAACCTTTACaggtgttttttgtgttatatCCTTTTGCTTTTCTCTCAGTGGAAGGTTTCATTTCTATCAAGGAACAAAAAGTATACTTTAACTTAAGGTTAAGAACTACCTCAATTACCATCAACATTACAGCACTGAGAGAATGGTCAGAAACctgtataattaaatgtacattgaaTATGAAAATAAGCAACAGATTGCAATGTACAAACATGGATaacgaagaagaaaaaatacattcaaagatTTACGTTATGAACAACCCTAACAGAGAGAGCAAActttataaaaagcaataaagtCAGTTTTATCTATCAAAGCCTTAAGTCTGATGTAGATATTGAGATATTGAGAACTTAAAACTGTGCAGTActtgtgctatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagtgacgcCATGCTGAGTGACATGGTGAGGCATCGCCCCCAGCTGCACTGCACCGCTATTCCCAACGTgactcctccctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86247 lncRNA upstream 598113 8133288 ~ 8136210 (+) True G69023
TU86229 lncRNA upstream 719320 8014744 ~ 8015003 (+) True G69006
TU86203 lncRNA upstream 859581 7874527 ~ 7874742 (+) True G68982
TU86116 lncRNA upstream 1107919 7625988 ~ 7626404 (+) True G68904
TU86061 lncRNA upstream 1265013 7469078 ~ 7469310 (+) False AMCG00014272
TU86492 lncRNA downstream 154647 8890586 ~ 8890834 (+) True G69232
TU86614 lncRNA downstream 630598 9366537 ~ 9376350 (+) True G69326
TU86679 lncRNA downstream 1165511 9901450 ~ 9910048 (+) True G69384
TU86698 lncRNA downstream 1238485 9974424 ~ 10028351 (+) True G69400
TU86728 lncRNA downstream 1318552 10054491 ~ 10054711 (+) True G69428
AMCG00014309 mRNA upstream 226636 8478982 ~ 8507687 (+) True AMCG00014309
AMCG00014308 mRNA upstream 332964 8386165 ~ 8401359 (+) True AMCG00014308
AMCG00014307 mRNA upstream 352039 8343001 ~ 8382284 (+) True AMCG00014307
AMCG00014306 mRNA upstream 412584 8263436 ~ 8321739 (+) True AMCG00014306
AMCG00014299 mRNA upstream 483388 8204822 ~ 8250935 (+) True AMCG00014299
AMCG00014314 mRNA downstream 59289 8795228 ~ 8824532 (+) True AMCG00014314
AMCG00014315 mRNA downstream 139228 8875167 ~ 8875832 (+) True AMCG00014315
AMCG00014313 mRNA downstream 208056 8943995 ~ 8972432 (+) True AMCG00014313
AMCG00014316 mRNA downstream 268561 9004500 ~ 9020633 (+) True AMCG00014316
AMCG00014321 mRNA downstream 353935 9089874 ~ 9130531 (+) True AMCG00014321
TU86046 other upstream 1317729 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 1384856 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 4082359 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 4082359 4649200 ~ 4651964 (+) False G68475
TU84898 other upstream 6023994 2709024 ~ 2710329 (+) True AMCG00014146
TU86705 other downstream 1267119 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 5600919 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 6939692 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 6939692 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 7393586 16129525 ~ 16132802 (+) False AMCG00014508

Expression Profile