RNA id: TU86492


Basic Information

Item Value
RNA id TU86492
length 249
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G69232
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8890586 ~ 8890834 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gttctgatgctcacgtgcccattgtaggcgctttcggcagtggacaggggtcagcatgggcgccctgactggtctgcagctacgcagccccatatgcaacaaactgcgatgcactgtgtgttctgacacctttctatcagaaccagcattcactttttcagcaatttgagctacagtagctcatctgttggatcggaccacacgggccagccttcgctccccacgtgcatcaatgagccttggccgccc

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86463 lncRNA upstream 154647 8734323 ~ 8735939 (+) True G69206
TU86247 lncRNA upstream 754376 8133288 ~ 8136210 (+) True G69023
TU86229 lncRNA upstream 875583 8014744 ~ 8015003 (+) True G69006
TU86203 lncRNA upstream 1015844 7874527 ~ 7874742 (+) True G68982
TU86116 lncRNA upstream 1264182 7625988 ~ 7626404 (+) True G68904
TU86614 lncRNA downstream 475703 9366537 ~ 9376350 (+) True G69326
TU86679 lncRNA downstream 1010616 9901450 ~ 9910048 (+) True G69384
TU86698 lncRNA downstream 1083590 9974424 ~ 10028351 (+) True G69400
TU86728 lncRNA downstream 1163657 10054491 ~ 10054711 (+) True G69428
TU86731 lncRNA downstream 1164543 10055377 ~ 10055733 (+) True G69431
AMCG00014315 mRNA upstream 14754 8875167 ~ 8875832 (+) True AMCG00014315
AMCG00014314 mRNA upstream 66054 8795228 ~ 8824532 (+) True AMCG00014314
AMCG00014309 mRNA upstream 382899 8478982 ~ 8507687 (+) True AMCG00014309
AMCG00014308 mRNA upstream 489227 8386165 ~ 8401359 (+) True AMCG00014308
AMCG00014307 mRNA upstream 508302 8343001 ~ 8382284 (+) True AMCG00014307
AMCG00014313 mRNA downstream 53161 8943995 ~ 8972432 (+) True AMCG00014313
AMCG00014316 mRNA downstream 113666 9004500 ~ 9020633 (+) True AMCG00014316
AMCG00014321 mRNA downstream 199040 9089874 ~ 9130531 (+) True AMCG00014321
AMCG00014323 mRNA downstream 246197 9137031 ~ 9144426 (+) True AMCG00014323
AMCG00014322 mRNA downstream 266910 9157744 ~ 9172062 (+) True AMCG00014322
TU86046 other upstream 1473992 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 1541119 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 4238622 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 4238622 4649200 ~ 4651964 (+) False G68475
TU84898 other upstream 6180257 2709024 ~ 2710329 (+) True AMCG00014146
TU86705 other downstream 1112224 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 5446024 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 6784797 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 6784797 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 7238691 16129525 ~ 16132802 (+) False AMCG00014508

Expression Profile