RNA id: TU86614


Basic Information

Item Value
RNA id TU86614
length 2853
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G69326
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9366537 ~ 9376350 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acacacacacacacacacacatatatacacacaaatacacagaaatattCTCATTAATTGTATTTGGATATATTGGACACTACACGTTACTGCATCTACCAAAATGAAAGCAGCTTACGTACAAAAGTATCCATAACTATTAACCTGAAATAGTTGCACTGCATGTACTTTACAGACGGTGGTGTGTAAACTCTCAATGATAATTGATGCAAAACCCTGTGATATGATTGTGCTGCTAATCTCAGTGCGATCCTAGATCTTCATACATAAAGCATTGTTTCTGCAGAGCTACCCAAGCATTCGATATGTTAGCATTCGATATGTCTATGATTATCCACTAATGTGGGTGCATTGTCATGAATGTGTTTTCCTCGACAACCACAATGctggtttctttttcttatgAAAGGACTGTTGTGTCAATGTGCGAACATACACTAAACTGGTATTCAGTCAAGGGTTATTTTTTGTCCTCTAAATCTGAGAAAGCATGCTCTACCTACAGTATATTCTTCCATGGACAGTGGAATGACTTATTGTGTTGAGACCTTAAAACAGACTTGCTGATATGTTTCTACTGGTCTTGTTGAGTTGCAGGTGAGTGtggttgtatttaaattatatatacagtatatatagatCACAGAACTTTCACACCTATCATTTTAACAGTGAACTGCATTTCACAAACGGGcatttgttgcttttaaaatgtgtctgagGCGTCCTATCAAGTCTCAACCTTCCCATAGGTTCCCTCCGGAGGCCTGTAATGTTTTGGAAAAGCCTTCAACTGCAGAGTGTTAAAAGCATACTTGCGACATCCCACATTCTTCATGGTGTTTTCCCGCCGACAACCCTCACTGGGGGGAGAACAAGTACAGAGAATGACAgcagtgaagaaacaaaaaggctGTTAAGacaatgagaaactgaacaacCTTCTAACAAGCGCTAATAGCAATGGCTGATGGCAAGAGAGGGTGAAAAATGGACTGCAGTCAGCTTTAGAAAACCATTTTCACAGAACAGAacctaacaaagcaaaacaaaatcagaatttAACCAAAACATACAAGATTGATGCAGATAATCCTTTCACCATAAGTAAATGGATTGTTTAAATAggccatacacacacagtattggTTGAGTTCCATCACcgtacaaattaaaacattgttcaaGAGATTGAGACAACACCCCACGACCTAATACAGATAAGGGATTCTGATATGCAAGTGTGGATCTGATTACAGACATTCTTTGGCTAAATCCCGTTTGGCTGAGGGGCGGCAGGCATGCCATGGGGCAATGCTGCCACAGCCCCTCCAAATGAAGCAAGCCAAGGGGCACGGACTCATGAGGGGGAGGAATACAAGCAGCACACTCTAGCGAAATAAGAGCTTTTCTTGTATCTACAGGAGGACAGGACGTAAAGTGTgattttgggggttgtcttcaCTTCCTAACTTAAATGGTTTTACTATGGCTTATTTAATTGCAACACTGGGTAAGGGGTTTAGCAAGTTATATGTGAAAGCAAACTCAGTTTAACTACTGAGAGGTTGTAATTCgtgtacaacaaaaacaacatcatgaTACTGCGGAGAGAACTTCATGTGTGTAGAAACAATGGAGATTTGACATTGAATTTCCATACATTTCCACATTGCAGAACTTTAGTTCAGTCCTTCCTGATTCAAAAAGGTTATGCAATTTTTAATACTGTCTGCATGATGGGTGTGCTTGCCTTATCacaatcagttttaaaataactagTATTAAAAAGTCTACTtcgattttatttattttgtaacaatgcATTGACTTCATATACAATAAAAAGGAATGCCACATGCTAATGatataaaagttattttgtatattaatgtattctcTTAAGACAGAAtactatgaaaaacaaatataaagtaaaaaacaaGAACCTATTCCCTTTGCCATGGACACTGTaagcatttaatattttctataaACAAGACCGAAATGTTCTGCTTCAATACCATATGTTGCCCTACAGATAAATAGACATTCACTTCACAAGACCTTGTGTCAtggattacaaatgtatttttatttatcagtaTTTAACCTTGTCTTTCACTTTATGTGTCATGTCAACATGTCTGTATGTCCTGCTGAGGAGATCAGTGCAACTTACTCCTGGAGCAAGCCGGTGACAGAGTTAAAATCTGTATATGAAGTACACACATCAGTGTCAGATCTCATCTGGCATCTGTGTTACACCACCGTGTCTGGGCTGCCTTTCCACATTTGCATTGCCCAAGTATTGTAAGGCTTTGTCTTTGAAAGCTGTATCCTGTGCTTAACACAGACTgtacagaataatacattatgaTGGGCTGATATACTATGGACACCTGGCAGAATCTGGGCAGACCACCAGCTGTAACTGACCAGCTGTCAAAAGCTCAACATCATGTACCCATACCCTGGGCAATCACCTGTTCTGAAACCTGTTAAGCTTGTTTGTTCTTCCAGGACTTTCCTCTAAAGTCAATTTCAGATTAAACTAGAGACCTCCGAAGAAGGTCCTGTAAAGGAAATGGGCTGCACTTGCACAACATTCGAAATGATTCAATGAGTGCTCCTTTACCCATGACAATGATGACAATTACAATTAGTAAAAGTCTCCATTTTCCCTTTATACAGTTCTCAATTTTACCTTATAGGgaagtgtatttgtgtttcatttctcCTTGGAATTTTCTGTCTTGCAGAAAGGTGTTACTTTCTTCTTCAAAGACAGAAGAAGGTTAGTTATAAAACAGatggtataaaataaataattcaattctTGTAACATTTACA

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86492 lncRNA upstream 475703 8890586 ~ 8890834 (+) True G69232
TU86463 lncRNA upstream 630598 8734323 ~ 8735939 (+) True G69206
TU86247 lncRNA upstream 1230327 8133288 ~ 8136210 (+) True G69023
TU86229 lncRNA upstream 1351534 8014744 ~ 8015003 (+) True G69006
TU86203 lncRNA upstream 1491795 7874527 ~ 7874742 (+) True G68982
TU86679 lncRNA downstream 525100 9901450 ~ 9910048 (+) True G69384
TU86698 lncRNA downstream 598074 9974424 ~ 10028351 (+) True G69400
TU86728 lncRNA downstream 678141 10054491 ~ 10054711 (+) True G69428
TU86731 lncRNA downstream 679027 10055377 ~ 10055733 (+) True G69431
TU86745 lncRNA downstream 771629 10147979 ~ 10151913 (+) True AMCG00014345
AMCG00014327 mRNA upstream 5361 9328690 ~ 9361176 (+) True AMCG00014327
AMCG00014324 mRNA upstream 93482 9259294 ~ 9273055 (+) True AMCG00014324
AMCG00014322 mRNA upstream 194475 9157744 ~ 9172062 (+) True AMCG00014322
AMCG00014323 mRNA upstream 222111 9137031 ~ 9144426 (+) True AMCG00014323
AMCG00014321 mRNA upstream 236006 9089874 ~ 9130531 (+) True AMCG00014321
AMCG00014329 mRNA downstream 66849 9443199 ~ 9458087 (+) True AMCG00014329
AMCG00014330 mRNA downstream 99059 9475409 ~ 9482055 (+) True AMCG00014330
AMCG00014336 mRNA downstream 427607 9803957 ~ 9808880 (+) True AMCG00014336
AMCG00014337 mRNA downstream 464673 9841023 ~ 9908262 (+) True AMCG00014337
AMCG00014334 mRNA downstream 537775 9914125 ~ 9916789 (+) True AMCG00014334
TU86046 other upstream 1949943 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 2017070 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 4714573 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 4714573 4649200 ~ 4651964 (+) False G68475
TU84898 other upstream 6656208 2709024 ~ 2710329 (+) True AMCG00014146
TU86705 other downstream 626708 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 4960508 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 6299281 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 6299281 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 6753175 16129525 ~ 16132802 (+) False AMCG00014508

Expression Profile