RNA id: TU86698


Basic Information

Item Value
RNA id TU86698
length 919
lncRNA type read_through
GC content 0.34
exon number 2
gene id G69400
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9974424 ~ 10028351 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACAAAAGGTGGGGGTTTTCCTTTTGTTCATTCAGAactttaaatcttaaatgctGAAAAGCATTAGAAGAACAAAGCAAATCCAGTGCTAAGAATACATTTCTCTATGAACCACCTTTTTTCCAATATTGAGgctatttgaattaatttagtcACACTGAAATggcattttcagaaatgtgttaaataaactttgcttccctgttttttttttttttttacattttaaaatatttcctgtAATTGTGTCTGAACATACAAGACAAGAAAGATAAAAGCAATACTGGAATCGATTGGTCATGTGTACATGCACACTAGATCCCATAACATCTCACTCTTGTGTCTTATCATTAGTCGTTTTAAGTGTTGGTTCACTTTATATAAAACTCTGTAAAAGGTATTCATAGTATATCAAATTTTGAACTGGAATACCTTTTCCACTTTTAGGTGTACaaaatgttcataatcatgATTTGCCTTCATTTGGCACTGGGAGTAATAacttatatgtttttaaatgatgtttgttttctatattttgttacatttaataatcATGCTTACActtcaaatgcattcaaaaggAAATCTCATGTCAGTGCATGCAAACGCTCTTTGTAAAGCATCTATCAGGCCACTAGAGCTCCatgttagttatttttttaatatgaattcaaATAGTAAGGTTGTTAGTAGAAGTATTAATACTGGTAGTACTTCTTTATAATCAGTATGCATCTGATTAGACATCTTTCCAGATCAAATTCTCTTCACATGTCTTTGCCACATTCAGGGCACAAGATGTCGTCTCTCTCGGTCAGGAATCCTCGGCCGACCAGGGAGACGGAACACTTTTTGCAGTTGAAGCAATCGTTGTGCCACTGGCGTTCCTCAAAGGAGATGTATTTGCTCCCTCCAA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86679 lncRNA upstream 64376 9901450 ~ 9910048 (+) True G69384
TU86614 lncRNA upstream 598074 9366537 ~ 9376350 (+) True G69326
TU86492 lncRNA upstream 1083590 8890586 ~ 8890834 (+) True G69232
TU86463 lncRNA upstream 1238485 8734323 ~ 8735939 (+) True G69206
TU86247 lncRNA upstream 1838214 8133288 ~ 8136210 (+) True G69023
TU86728 lncRNA downstream 26140 10054491 ~ 10054711 (+) True G69428
TU86731 lncRNA downstream 27026 10055377 ~ 10055733 (+) True G69431
TU86745 lncRNA downstream 119628 10147979 ~ 10151913 (+) True AMCG00014345
TU86759 lncRNA downstream 195320 10223671 ~ 10224035 (+) True G69457
TU86811 lncRNA downstream 464796 10493147 ~ 10493396 (+) True G69499
AMCG00014334 mRNA upstream 57635 9914125 ~ 9916789 (+) True AMCG00014334
AMCG00014337 mRNA upstream 66162 9841023 ~ 9908262 (+) True AMCG00014337
AMCG00014336 mRNA upstream 165544 9803957 ~ 9808880 (+) True AMCG00014336
AMCG00014330 mRNA upstream 492369 9475409 ~ 9482055 (+) True AMCG00014330
AMCG00014329 mRNA upstream 516337 9443199 ~ 9458087 (+) True AMCG00014329
AMCG00014342 mRNA downstream 96803 10125154 ~ 10145702 (+) True AMCG00014342
AMCG00014345 mRNA downstream 120101 10148452 ~ 10151030 (+) False AMCG00014345
AMCG00014344 mRNA downstream 128114 10156465 ~ 10162165 (+) True AMCG00014344
AMCG00014352 mRNA downstream 200649 10229000 ~ 10242261 (+) True AMCG00014352
AMCG00014351 mRNA downstream 280071 10308422 ~ 10318002 (+) True AMCG00014351
TU86046 other upstream 2557830 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 2624957 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 5322460 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 5322460 4649200 ~ 4651964 (+) False G68475
TU84898 other upstream 7264095 2709024 ~ 2710329 (+) True AMCG00014146
TU87778 other downstream 4308507 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 5647280 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 5647280 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 6101174 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 6437330 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile