RNA id: TU86857



Basic Information


Item Value
RNA id TU86857
length 249
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G69540
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10837204 ~ 10838230 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGGCAGGCTGTTTGTATAGAGACACGTGTCCCTGTGATTGATGCAGAGTTTAACCCCCttttgatggttttgttttccatttcactgGACTCCAAGGGAAAACGATCTTTCCTTTTTTAGAATATATCACTTTTATTATTGAAAATTCCTGCTATAGTGGACTTGCTGCTCGTAGTTTGGGATGTGGATGTGGATGTGTGAGACACAGGAGGTTCCACAATGGAAGAACACAGACATCACAGTCATCAg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU86811 lncRNA upstream 343808 10493147 ~ 10493396 (+) True G69499
TU86759 lncRNA upstream 613169 10223671 ~ 10224035 (+) True G69457
TU86745 lncRNA upstream 685291 10147979 ~ 10151913 (+) True AMCG00014345
TU86731 lncRNA upstream 781471 10055377 ~ 10055733 (+) True G69431
TU86728 lncRNA upstream 782493 10054491 ~ 10054711 (+) True G69428
TU86875 lncRNA downstream 121096 10959326 ~ 10961929 (+) True G69556
TU86944 lncRNA downstream 382840 11221070 ~ 11221274 (+) True G69610
TU87041 lncRNA downstream 802853 11641083 ~ 11641452 (+) True G69681
TU87100 lncRNA downstream 881088 11719318 ~ 11722767 (+) True G69722
TU87118 lncRNA downstream 945635 11783865 ~ 11784083 (+) True G69739
AMCG00014355 mRNA upstream 35894 10766636 ~ 10801310 (+) True AMCG00014355
AMCG00014356 mRNA upstream 83057 10721084 ~ 10754147 (+) True AMCG00014356
AMCG00014357 mRNA upstream 165466 10665393 ~ 10671738 (+) True AMCG00014357
AMCG00014350 mRNA upstream 456783 10352845 ~ 10380421 (+) True AMCG00014350
AMCG00014351 mRNA upstream 519202 10308422 ~ 10318002 (+) True AMCG00014351
AMCG00014362 mRNA downstream 223365 11061595 ~ 11086602 (+) True AMCG00014362
AMCG00014363 mRNA downstream 259337 11097567 ~ 11105850 (+) True AMCG00014363
AMCG00014361 mRNA downstream 287169 11125399 ~ 11129360 (+) True AMCG00014361
AMCG00014369 mRNA downstream 339731 11177961 ~ 11220774 (+) True AMCG00014369
AMCG00014370 mRNA downstream 554159 11392389 ~ 11393405 (+) True AMCG00014370
TU86705 other upstream 828556 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 3420610 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 3487737 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 6185240 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 3498628 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 4837401 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 4837401 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 5291295 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 5627451 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile