RNA id: TU87041


Basic Information

Item Value
RNA id TU87041
length 370
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G69681
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11641083 ~ 11641452 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggccaaaatggtttaatagaggtatgcaaaaaaatataaagaggaagaaaatgttgtatagcacatacaaaagggatggtgatgaaacagaatacatagaatatgttgagctgcaaagagatcttaagaaagggatcaggaaagcaaagagggaaatagaaagaaacaaagctcttggagctaaaaccaatgcaaagagcttttttcaatattacaacagcaagaggtcaataaaggaggaagtgaaacagataaagggcaaaaatagaGGTactctaaatgagtatttcagaggtttttacaaaagaaaaaacaaataacatgccacaggttgacaatcagttcagtcaaaccctaagagagatcagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86944 lncRNA upstream 419809 11221070 ~ 11221274 (+) True G69610
TU86875 lncRNA upstream 679154 10959326 ~ 10961929 (+) True G69556
TU86857 lncRNA upstream 802853 10837204 ~ 10838230 (+) True G69540
TU86811 lncRNA upstream 1147687 10493147 ~ 10493396 (+) True G69499
TU86759 lncRNA upstream 1417048 10223671 ~ 10224035 (+) True G69457
TU87100 lncRNA downstream 77866 11719318 ~ 11722767 (+) True G69722
TU87118 lncRNA downstream 142413 11783865 ~ 11784083 (+) True G69739
TU87160 lncRNA downstream 958652 12600104 ~ 12600313 (+) True G69778
TU87223 lncRNA downstream 1338807 12980259 ~ 12982434 (+) True G69833
TU87357 lncRNA downstream 1604857 13246309 ~ 13251732 (+) True AMCG00014407
AMCG00014373 mRNA upstream 623 11605968 ~ 11640460 (+) True AMCG00014373
AMCG00014371 mRNA upstream 79213 11540432 ~ 11561870 (+) True AMCG00014371
AMCG00014370 mRNA upstream 247678 11392389 ~ 11393405 (+) True AMCG00014370
AMCG00014369 mRNA upstream 420309 11177961 ~ 11220774 (+) True AMCG00014369
AMCG00014361 mRNA upstream 511723 11125399 ~ 11129360 (+) True AMCG00014361
AMCG00014376 mRNA downstream 2576 11644028 ~ 11659546 (+) True AMCG00014376
AMCG00014378 mRNA downstream 26704 11668156 ~ 11678181 (+) True AMCG00014378
AMCG00014377 mRNA downstream 47781 11689233 ~ 11696926 (+) True AMCG00014377
AMCG00014381 mRNA downstream 69946 11711398 ~ 11711931 (+) True AMCG00014381
AMCG00014382 mRNA downstream 118449 11759901 ~ 11761901 (+) True AMCG00014382
TU86705 other upstream 1632435 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 4224489 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 4291616 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 6989119 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 2695406 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 4034179 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 4034179 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 4488073 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 4824229 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile