RNA id: TU87223


Basic Information

Item Value
RNA id TU87223
length 2138
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G69833
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 12980259 ~ 12982434 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGATTTCAATACAGGGTAATGGGAGGGTGATTTCATGGAGGGTACTAGGGAGTGTATCCAATATCGTGCGAGAGAAGTAAATGCAGAGTTACTGTGAAATATAGAAAGAAATGTGAAGGAGAGTTGCTGAAAATGGAAGGCTTTTAATGTCCTGTCAGCATATAAAGATGGCTTATTAATAGTTCAGATAAAGGAGCTTTGTTAATGCCGGCTAGTGCCAtctgtgatttttatttgttaaaaataatttaattaattaattaattaattaaacaaatataaatgtttctatACCGGGTCTCTCTTAACTTTCTAATTTTAATACCCTATCTCTAGTGTCAAGGTAAATGGGTTTCTCAATCACATTGTATGGTACTGCTTTAAAGAAATTAGTTTCCAATATAGCTCAGTCTTGATTATTAAATTCAGCTGCTTGCATTCTCTACAGAGAATTGTAGCGAACTGAGGATTTTAAAAAGAGGTATAGTTTAAAAATGCAGGTTTAATAAGACTTGAGAAGGATACAAAGAAACAGACCTCCAGCAATGTAacatcttatttaatttaagacaTCAACATAACGCCATAaaccattgtatttttgcacaggCCTCTTCTCTGTATAATATTGCAGTATATAGATCCCattatttaagattttgttttgcaaagacTTCCCCCCACCTATCCATTAAAGGTtaggaaataaacattttataaataacacatatttaaatatattactgcATGGCTCAATAACAACACCCCATCAGAATCACATtttggcaaaacaaaatgtcctgAATTAACTAAcatattgaattatttgaaaAGAGTTCTGCTTCATGTATTATTCAGTATTGAATATGCAATGCCAAggtaaaaagtacaaaaaaagtgtgtgtgtatatatatatatacacacatacatatacacacacagacacacacatatacatgcatacattcatacatacatatatacacatattgtaTGTAGGTATATATTCACACATGCATGAATACATATTCACACACCTGTAGATTGATAAAGCacattgtgaaaaatgttgATCTCAAATCCTCCTGTACATGAACAGTAAGGGGCATGTGAAGTTTAGCAAAGCCTGTAATCCATTGCtagaatataaataaacccTGTTGTATGGACCACAATGGCATGAATTAGAATAGCTACCTACACCAAGATTGTTCCTAACATATTGATAAGTATTAACCACAGTTGCCATAGGTGGTGTAAGTAAGTTGTAGAACAACAAATATTGGCACTGGATTGGCATTTCAAAGCTTGGGATGTGATAGGGGAATATGTTGGAGAAAGAGGTTGTTTTATTGTGcctaaaacaacacaaaaggtGTTACAGTGATATGGAACAATCCAAACTTCCAGTGTAAGGTTGAGTGAGATAACCAAAGGATTTGTTTCAATTTCTGtctctgtaatttatttgttttactactGATTGCCTACATTTGTATATGAGCAGAATGGCAGAGGGACCTCctgaagaagggaaaaaaatccatgtatgatttttttttttttttgtctaacaATGGTGCTAAACATATAACCGAGTGGAGTACTaaatttaatgtttgttttgtttttttaaataaagatgaatAAAAAATTAATGACTTCCCTTTTTCCCACATCCCCCACAGTGTGAAACCTGAGAGAAACATGTTGGTTATCAGAATAGAAGCAGAGCCTTTTGCACTGAAAGCTTTTATACGACTGCACAAATGCAAGATGGTTAACCTGCATGTGTTCGAATACTGTATGAAAACAGTTCTCAATATTCCAGACAAATATGAAAAAGGCTAAGCAGCAGGATGTTCACCAGATATATTTATCactgaaatgtgtaaatgttaagTCATTTCTGAAACAAGGGCTCAAAACGAAGGTTTCCTTTGGGCATTGAAATGTACCCCTGTTAAGTCACTACGTATTCTCACTTTTTGTGCAAATAAATCTGTAGGTGTTTTAAATGGCTTCATTGTTTCAATAGTATAATTActttgatgtttcttttttttttaacactttcaatTTGGTTTTCACCTCAACACATATTTTAGCTGCAGTCCAAGATAACATTAAGAAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87160 lncRNA upstream 379946 12600104 ~ 12600313 (+) True G69778
TU87118 lncRNA upstream 1196176 11783865 ~ 11784083 (+) True G69739
TU87100 lncRNA upstream 1257492 11719318 ~ 11722767 (+) True G69722
TU87041 lncRNA upstream 1338807 11641083 ~ 11641452 (+) True G69681
TU86944 lncRNA upstream 1758985 11221070 ~ 11221274 (+) True G69610
TU87357 lncRNA downstream 263875 13246309 ~ 13251732 (+) True AMCG00014407
TU87358 lncRNA downstream 263875 13246309 ~ 13251732 (+) False AMCG00014407
TU87406 lncRNA downstream 351780 13334214 ~ 13335185 (+) True G69959
TU87408 lncRNA downstream 369899 13352333 ~ 13379593 (+) False G69961
TU87409 lncRNA downstream 395100 13377534 ~ 13380404 (+) True G69961
AMCG00014403 mRNA upstream 1150 12978471 ~ 12979109 (+) True AMCG00014403
AMCG00014404 mRNA upstream 1831 12978165 ~ 12978428 (+) True AMCG00014404
AMCG00014402 mRNA upstream 2164 12970258 ~ 12978095 (+) True AMCG00014402
AMCG00014392 mRNA upstream 130888 12842790 ~ 12849371 (+) True AMCG00014392
AMCG00014393 mRNA upstream 139131 12834950 ~ 12841128 (+) True AMCG00014393
AMCG00014399 mRNA downstream 27271 13009705 ~ 13015654 (+) True AMCG00014399
AMCG00014400 mRNA downstream 47452 13029886 ~ 13040944 (+) True AMCG00014400
AMCG00014401 mRNA downstream 75431 13057865 ~ 13065977 (+) True AMCG00014401
AMCG00014406 mRNA downstream 256639 13239073 ~ 13240110 (+) True AMCG00014406
AMCG00014405 mRNA downstream 258406 13240840 ~ 13245634 (+) True AMCG00014405
TU86705 other upstream 2971611 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 5563665 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 5630792 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 8328295 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 1354424 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 2693197 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 2693197 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 3147091 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 3483247 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile