RNA id: TU87308


Basic Information

Item Value
RNA id TU87308
length 961
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G69896
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13085363 ~ 13086345 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCTCAATACCTTTATTAGCTTTCCAAGAATGTTACAGTTTGTACAGAACACCTAATGGGGCTCCAAAGTGGAATCTTGATTTAGTTATTAGTAATAAccagctgaaaaataaaaacagtgatcTAAACTTAAAGCTAACAGTGTAATATCCTTCAGAAAGTCCAGGTTACTTCTCCCATTAATGATTTATCATATACTTAGGTAGTGTTGAAAGAAAATAGAAGTCGTTGATGTAAtaccaatgaaaacaaaaaacaaaacaaaaaacctactACACCCTATTTGGTCTCCCACCTTTGCAGACACATATAATGcttcttttaaaagcaaaagtgACAAATGTGTGCtccactttcttttttaatacatgaaCAGTATACAATAGAAaaaaaaaaaaaaaaaaaaaaaaagctttttggatTCTGTGAATATTGGGATGAAAATGCATTGAGCCGGGCTGCTCTTCTGAGCTCTGGAAACTGACGGGTTGCTCTTCCTAGATTTTATCGGTAGCCAGGGCCCGGCTGGGTGTAGCCTTGACCATAGGTTGGGCGGTTGCGGGCATAAGGGTTGGAGCCACTAGGTGGAGGGGTCACTGTGCTGCCCGGAGGGGGGGTGAAACCTGGGCGAGGCTGGTAGGCTCCAGCAGGCTGGGTAGGGGCCATACCTGGCTGGGAGGCAGGGGGCATGTTGTAGTTAGCTGGCTGGGAGGCCTGTGTCGTGTAGTTTTGGGCAGGGAAGCTGCCGGGAGGGTACTGCTGGGCGGtctggggctgctgctgctgctgacctGCGAAGCCTGGTGCCGGGGCGGCTGCCTGGGATGTCGGCGGGTTGTAGCTTTggaactgctgctgctgctgcggagTGGGCGGAGGCCCGGCCTGGGGGTTGTAGCCTGCTGAGGAGCAAATACAGTCGGATTAGAGGATGTAACTacttaaataatgtaaacagGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87239 lncRNA downstream 114808 12970253 ~ 12970555 (-) True G69849
TU87141 lncRNA downstream 1204907 11879097 ~ 11880456 (-) True G69759
TU87123 lncRNA downstream 1313970 11769690 ~ 11771393 (-) True G69743
TU86933 lncRNA downstream 1948277 11132788 ~ 11137086 (-) False AMCG00014365
TU86856 lncRNA downstream 2264291 10815771 ~ 10821072 (-) True G69539
TU87328 lncRNA upstream 1263 13087608 ~ 13096336 (-) False AMCG00014412
TU87397 lncRNA upstream 215579 13301924 ~ 13302379 (-) True G69950
TU87421 lncRNA upstream 218081 13304426 ~ 13375879 (-) True G69973
TU87498 lncRNA upstream 536770 13623115 ~ 13623381 (-) True G70034
TU87527 lncRNA upstream 608412 13694757 ~ 13696971 (-) True G70063
AMCG00014398 mRNA downstream 102868 12907404 ~ 12982495 (-) True AMCG00014398
AMCG00014397 mRNA downstream 209827 12850007 ~ 12875536 (-) True AMCG00014397
AMCG00014396 mRNA downstream 304525 12778483 ~ 12780838 (-) True AMCG00014396
AMCG00014395 mRNA downstream 345698 12729727 ~ 12739665 (-) True AMCG00014395
AMCG00014389 mRNA downstream 358719 12721742 ~ 12726644 (-) True AMCG00014389
AMCG00014412 mRNA upstream 1317 13087662 ~ 13133751 (-) True AMCG00014412
AMCG00014411 mRNA upstream 88866 13175211 ~ 13203807 (-) True AMCG00014411
AMCG00014408 mRNA upstream 122400 13208745 ~ 13237528 (-) True AMCG00014408
AMCG00014413 mRNA upstream 155481 13241826 ~ 13242652 (-) True AMCG00014413
AMCG00014410 mRNA upstream 165590 13251935 ~ 13260989 (-) True AMCG00014410
TU87063 other downstream 1422870 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 2287216 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 3768196 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 4701139 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 4926773 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 15243394 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 16302945 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 19176822 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 19511117 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 19511117 32597462 ~ 32619149 (-) False G73127

Expression Profile