RNA id: TU87572


Basic Information

Item Value
RNA id TU87572
length 382
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id G70094
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13770177 ~ 13772272 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGACCTGCTCTGCTTCTACTTTGCAGAAATGTTGGCATTCCCCATTGTTGTTTTCACAGAGCTTCGGAATGACGATTTCACAGTTTCTCCCTTGATAGCCTGTTCTGCAGAAGCACGTGTATGCTCCTATTCCATCCTGGCACTGACCAGCATTGAGACATGGTGCAGATGTGCAGGCATCGCCGTcaaaatatatattccagaaGTCATCCGTTTTCTTTTGGTCTTCAAACACCTCCCTTGCTTCTTCGTAACTGCACTTCTCTTCGTAGCATTCTCTCTCTAGGTTTCCTCGTCTTAACTCTTCGAAAGGACTGTTAGCCCTCCGGTGTCTGCTGAAGACCTGGCTGGCCCACTCTTTCCCCAGGAACACTGAATCAA

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process
GO:0004806 triglyceride lipase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87569 lncRNA downstream 8757 13759226 ~ 13761420 (-) True G70091
TU87527 lncRNA downstream 73206 13694757 ~ 13696971 (-) True G70063
TU87498 lncRNA downstream 146796 13623115 ~ 13623381 (-) True G70034
TU87421 lncRNA downstream 394298 13304426 ~ 13375879 (-) True G69973
TU87397 lncRNA downstream 467798 13301924 ~ 13302379 (-) True G69950
TU87667 lncRNA upstream 147249 13919521 ~ 13921330 (-) True G70169
TU87744 lncRNA upstream 327092 14099364 ~ 14102156 (-) True G70238
TU87845 lncRNA upstream 1273580 15045852 ~ 15059774 (-) True G70315
TU87890 lncRNA upstream 1466531 15238803 ~ 15242333 (-) True G70346
TU87964 lncRNA upstream 1601966 15374238 ~ 15376774 (-) True G70402
AMCG00014428 mRNA downstream 27358 13728703 ~ 13742819 (-) True AMCG00014428
AMCG00014429 mRNA downstream 60890 13697335 ~ 13709287 (-) True AMCG00014429
AMCG00014430 mRNA downstream 233808 13531195 ~ 13536369 (-) True AMCG00014430
AMCG00014438 mRNA downstream 242575 13498726 ~ 13527602 (-) True AMCG00014438
AMCG00014432 mRNA downstream 282564 13478348 ~ 13487613 (-) True AMCG00014432
AMCG00014436 mRNA upstream 12643 13784915 ~ 13790135 (-) True AMCG00014436
AMCG00014435 mRNA upstream 56183 13828455 ~ 13846485 (-) True AMCG00014435
AMCG00014431 mRNA upstream 80890 13853162 ~ 13864850 (-) True AMCG00014431
AMCG00014433 mRNA upstream 94371 13866643 ~ 13882123 (-) True AMCG00014433
AMCG00014450 mRNA upstream 151327 13923599 ~ 13929423 (-) True AMCG00014450
TU87063 other downstream 2107684 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 2972030 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 4453010 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 5385953 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 5611587 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 14557467 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 15617018 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 18490895 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 18825190 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 18825190 32597462 ~ 32619149 (-) False G73127

Expression Profile