RNA id: TU87784



Basic Information


Item Value
RNA id TU87784
length 1041
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G70271
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 14466704 ~ 14467744 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AATAGCTTCCAAACTGTCTTGTCCTGATGGAAGAAATATAACTACATGAAAATGATCCCCTGTGTTTTCAGCTCCTGCATTAGATGCTCACTTGAAGGTCACTTAGTATTGGCTAAGAATCAGGATTGTCGGGATACTGAGATTGTGCATGTGCTGTCTGGTTCACACTCTGCTCGTCTCGTGTAATCTTCAGTGCATGGCCCAACCTCGGCTGTCTTCCGCGATTCCACGCGGCAGGCAACGGTGCTTCTTCTCTCTTTCCGTGTTTCAACAAACAGGCAAGACAAAACTTTCAATATCATGTCTTACACACCTTTTCATGTATTCCTCTAGTCTGCCGTGTTGAGATTAAAAGGTGCTGTACAAAGGAGAACTATCAAGCGTTAAGCTCCTCCTGATCTCAAACTTGTCTTCTTCTATTACTCCAGCCTACCAAAACAGAGGTGACAACAGCCAACACACTCAATAAGCATTTGATATTTTCACGGTCGATCATTTTTCCTTAAAGTGActgcaatggctttttttttttttttttttgtcctttgaAGGGGTGTGGTAAGCAGGTTATTGTCCTGTTTATGGTTTGTTTGATTACTATTTCAATTactataatgttttaaataacctTGTATCGGCAAACAACAATGCTTTACAAAACACTTGATTAGGTTTGtgtcagttttaaaaaacattttatacatgttttcgTGTTCGATTTAGTTTTTGGCATACGAATAGGAAACTCAGTTTGGAATAACTTGTAGATCTTTGCTCCTCTCATATTCTTCTCTATAACAGTCTAGCCACTGTTATACTGGTGTAACTCCCACTACTGTTTTATTcacataataaacataacatgCTGTGCACTAAGTGATGTTTCTGTGAGACCATCTTTGAAATTCTGCATTGTTATGAAACATCACTGAGGTCAGTATCTCCGATCTATGAATAAACTCACTCTTACCCAGAGGAACTGTATTCAGCGTTTCAACACTTCTTCACTTATGTGAAATGGTAGCCTTCAAAACCCAAACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU87767 lncRNA upstream 267396 14197980 ~ 14199308 (+) False AMCG00014456
TU87766 lncRNA upstream 272271 14193779 ~ 14194433 (+) False AMCG00014456
TU87727 lncRNA upstream 295692 14167446 ~ 14171012 (+) True G70221
TU87518 lncRNA upstream 769833 13694815 ~ 13696871 (+) True G70054
TU87516 lncRNA upstream 782212 13683043 ~ 13684492 (+) False AMCG00014423
TU87814 lncRNA downstream 712101 15179845 ~ 15180820 (+) True G70286
TU87887 lncRNA downstream 771912 15239656 ~ 15242333 (+) False AMCG00014470
TU87927 lncRNA downstream 882898 15350642 ~ 15430852 (+) True G70378
TU87973 lncRNA downstream 983034 15450778 ~ 15451268 (+) True G70409
TU87977 lncRNA downstream 1032814 15500558 ~ 15500832 (+) True G70413
AMCG00014457 mRNA upstream 4596 14452526 ~ 14462108 (+) True AMCG00014457
AMCG00014459 mRNA upstream 86685 14371145 ~ 14380019 (+) True AMCG00014459
AMCG00014461 mRNA upstream 124683 14302447 ~ 14342021 (+) True AMCG00014461
AMCG00014460 mRNA upstream 225209 14238011 ~ 14241495 (+) True AMCG00014460
AMCG00014458 mRNA upstream 231292 14223516 ~ 14235412 (+) True AMCG00014458
AMCG00014462 mRNA downstream 216989 14684733 ~ 14692283 (+) True AMCG00014462
AMCG00014465 mRNA downstream 252150 14719894 ~ 14750619 (+) True AMCG00014465
AMCG00014463 mRNA downstream 299743 14767487 ~ 14811135 (+) True AMCG00014463
AMCG00014466 mRNA downstream 356048 14823792 ~ 14828121 (+) True AMCG00014466
AMCG00014467 mRNA downstream 452669 14920413 ~ 14989067 (+) True AMCG00014467
TU87778 other upstream 109836 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 4458056 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 7050110 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 7117237 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 9814740 4649200 ~ 4651964 (+) True G68475
TU88057 other downstream 1207887 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 1207887 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 1661781 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 1997937 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 2935767 17403511 ~ 17448453 (+) False AMCG00014553

Expression Profile