RNA id: TU87890


Basic Information

Item Value
RNA id TU87890
length 3503
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G70346
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15238803 ~ 15242333 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttaataattaaagttaatttaattagcaCACATTTACcacatttacagtttatatttttgcatacagTACAGTCAACCAAGGAGACATTCATTACAGTTCATGAAACAGTTGATAAAACAATAGTTTGTTCATAGGTGCTGAGTTCCATAAGTAAACCGAAAGTAAGCGGTCAGATTTGAGCACACCGCAGCTATACAAGGCCCTTTCTACCACTGTACTTTAGCTTTTCTGTTGTATACACATATTGTAGGAGGCAGTTTCCCATGGCAGATATCTGAGTAAACTACAACAAGAAGGATGAGAGTTTAAGAAGTCTGCATGGGAGAGACTGCAGTGTCTGAAAGGATGCTAGACTCCCGACCTTGAGAGACAAAGgcatttttgatttgttttatctgtGTAAAAGACACCCTTTGTTACTTAGGCTACATTGACTTGTTTTCGCTGCTAAAGCTTGCTTTGTtctgcagtgctgtgaaaaccCAGTATTGTATATCCGCCTCAATGCGGAGAATGATTTTGACATGATAAGCCAAAGATCGCCTCCCTCCTTATCagatgaatatattttttttatctatagAGTTCTTCAATAAAACTGTGTTCCATATTATTGCATTTCAGATGACCAGGACTGAAAATGAAGGcctggtttttttttaaatattgccaAGTGACAGCTCTAGTATTTTTCTATGTATGGAAAACACAATGCTTCATTACTTTCATGATTCAGTGGACGTCTACATTTATTGATCTCATTTTGACACCGCTTATGCTGTGAGCAAACAACATGTGCACATACCTCTGGCCTTTCATTATTTCATACAGAACATAATGCCAATACAAAGCCAACAGGACCTGAAACATGATGAcgttttctagttttttttttttcagtagaaTCTACATGACcacacacaatgtttaaaaaaaaaaaagacaatgaaaataaGCAAAAGTATTTACACTCCGTACAGATATAAAAATTAGAAGCGttgctataaaaatataatctttacaTTAGGAAGTTGAGCGataattcaatataaaaatTAGAATTTAAAGTCTAAATCggcaaattaaaaaagcattgaatatatttattttgcAATGTCAGTTATAGATATGTATTCACACACATCTAtctctttatttcttctttttgtcattaaatgtgtttcttgtttcGTTTCTTCCTTTTCATACCTTAATATACCAAAGTTACCttgaattgaatattgaatattatacAGTGTTTGTATAATAGCTTTTCATAATGTCACTGTACCCTGGGGGGGTAATTTGTTAAAAACCTTCAGAATCTATACAATTTACATGTAATGTGTTTAGgatatttcttgtattttttaattaattgaatatatcCAAAttcctgtaaacaaaataaatataaataaatacacttatcTATAGTGTTAAAAGTAAATtcaattgtaaaacattttaacaaattaaatatctaAAAGGTCCAGTTATATACAGTGTTAATGCACAAAGAACATCTGGTTTGACTCTCCTGTTATTTTCCACAAGGGGGCGCTAACACGCTATAGTTGTAAAAGGAATTGTTTGAATTGATCTCCTTTAGGCAAACGATGAAGTACTCAGTTTCACAGAAGTGGGGGAGGGCAGTGTtgtataaagaacaaaaaactcaGCTGCCTTCATATCATGTTGTAGTTTGTCTGTATATTCCAGTACAAAAAGTTATTTCTAGATAATAAATggtataaattaaacaataccaCATTATCTATTGatctttaaattacacattgtaGGGTAGAACAACTAGAAATTCTCCTTTGTTTCCGCACTTTTCTTGCATGCCATCTGATTGTGTTTATTGATGCAGACGAGCAGAACTCAGTGTATTGATGCCGTCGGATTCATCCCATTCCATTTCATTCACCTTGTGAGCATAAACAGATAAGTGGACACAACACTTCCAGAGCCATGTACTGAAGGATTTCAGAATGGAAGGGATGATTATTCCCTGAAGCCCCCATTCTCCCCTCAGTATGGGAAGTAAAAGGCAGATACAGGAAGCCCCCAGGAACAAAACTGGGGCTTTCCCTGCCGCTCATTAATGCAGAATGCTTTCCAAGTCAACCTGTTTGCATGAAGTCTTCAGTACCTCTTTGGCTCTCAGCACACTTGCccctcaatatatatataaatatatatattccttcaTGTTATTAAAATCTTGCACTTACTCTTACTTATAACTTATATAGCCTTTGGAATTTTAGATATTAGCCtactactttttaaaatttcacGAACTTTGTTTTTAGAATTAGAACAGTGCTATAAAAACGGTAATTGTACATAACATTCTGATTCATAGAATACTGAATGAGTTTCTTGCATACTTTGAATGACACTTGCTTTGAACAGCCCAGTGtatctttccttttcttgtttctcttgGAGAGATTGCTGGGAAACGACTTCGATTTCCACACCCATTCTCTGTCAGCATGTTTTAAGATAGAGAGAGCAGTGGGGAAAATGCACGGTGCACTTTTATCCAGCGCCGCCTGGGTGCTGTGAAGTTCTGCATCATTCTCATTTTGCCTCAGTACCGAAAGGTGGTGCTCTCTTGGTTGGGGTGTCTAGATGTAGAACTCTTGCTCATCGTCGTCAGCCGCCCCCTCTCTGGGGGAGCCATTCTCAGTCTCGGTGCCATGGCCGCTGTCCGCAGCCGAGGGTGAGAGTCTGCACAGGGGGTAGCAGGCGCTGTGAGGCCTGGGGGGGCGGAGAATGGAGGGTAGGGGGGAAGTCGAATGGCAGCGGAGGTAGCTGTGGACGAGGGCTGGTGGCGGGGTGCGACAGGACAGCCCGGAGAAAGATGGGACAGGGTTGCTATGTGCAGAGAGGGGTCTGGGCCGTGGTGGTGGTTGGGGTATGCTCTTGTtgctggagcaggaggagggCCGCACGTAAGCGGACACCACTGACATATCCACGCTGCTGAGCTTGTTTCCCGTGTCCACGTCCGTCTCCTCGGCCCCCACCAGTGCGTCCACGTTGAGCCGGGAGCCGAGGACCAGGGAGGAGCGTGGCGAGGACGCGGGGGAGGCAGAGCggctgctgctggctgtgggGAGGCAGAAGAGGGAGCGAGTCCGATGGCCGGCCCACCAGGACCCCGCCAACTCCGGCTTACGGCCCCTGCTCGCCGCCTCCTCCCCCCCGCAGACACTCGGCAGGTCGTTTTGGGAGAGGCGGTTCTGGGCCCGGGGCCGTGAGGTTGATCTGTTGTAGCGTTTGTTTCTGTAGGAGACTGGGCCTCGTCCCAGGTGCATGCAGGGgacttggggggtgggggtgggtgcGGGGTCAGTATCTGCAGGCACTGGGGCAAACTGGGCAACTGTGTGCCTCCGCCGAGAGTGTCTGGAGGAGCCGTGcacctgcacacacaaacaagcacagaGAGGTTAATGCTTGGTCAGCACAGGCTTTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87845 lncRNA downstream 179029 15045852 ~ 15059774 (-) True G70315
TU87744 lncRNA downstream 1136647 14099364 ~ 14102156 (-) True G70238
TU87667 lncRNA downstream 1317473 13919521 ~ 13921330 (-) True G70169
TU87572 lncRNA downstream 1466531 13770177 ~ 13772272 (-) True G70094
TU87569 lncRNA downstream 1477383 13759226 ~ 13761420 (-) True G70091
TU87964 lncRNA upstream 131905 15374238 ~ 15376774 (-) True G70402
TU87969 lncRNA upstream 141300 15383633 ~ 15386700 (-) True G70407
TU87990 lncRNA upstream 263971 15506304 ~ 15506511 (-) True G70425
TU87985 lncRNA upstream 280187 15522520 ~ 15525014 (-) True G70420
TU88034 lncRNA upstream 401286 15643619 ~ 15644914 (-) True G70458
AMCG00014474 mRNA downstream 24736 15190111 ~ 15214067 (-) True AMCG00014474
AMCG00014475 mRNA downstream 50147 15180772 ~ 15188656 (-) True AMCG00014475
AMCG00014454 mRNA downstream 1053025 14183446 ~ 14185778 (-) True AMCG00014454
AMCG00014449 mRNA downstream 1060415 14167446 ~ 14178388 (-) True AMCG00014449
AMCG00014448 mRNA downstream 1091301 14144163 ~ 14147502 (-) True AMCG00014448
AMCG00014473 mRNA upstream 12063 15254396 ~ 15269030 (-) True AMCG00014473
AMCG00014479 mRNA upstream 50432 15292765 ~ 15297333 (-) True AMCG00014479
AMCG00014478 mRNA upstream 60009 15302342 ~ 15303905 (-) True AMCG00014478
AMCG00014477 mRNA upstream 67842 15310175 ~ 15329912 (-) True AMCG00014477
AMCG00014483 mRNA upstream 93874 15336207 ~ 15348473 (-) True AMCG00014483
TU87063 other downstream 3576310 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 4440656 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 5921636 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 6854579 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 7080213 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 13087406 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 14146957 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 17020834 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 17355129 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 17355129 32597462 ~ 32619149 (-) False G73127

Expression Profile