RNA id: TU87927


Basic Information

Item Value
RNA id TU87927
length 977
lncRNA type sense_over
GC content 0.33
exon number 3
gene id G70378
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15350642 ~ 15430852 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caaagtgtCCAAGATTTATTGTAGTTTAGGTAACCTTTTACACACAGGAAGGTTATATACAAATTAGTACTGTAAGctttacatttctgaagatTCCGTGGTATTTTAATAGTTACAGCagataatgaaaatacaaaacctaaaaaaaaaaaNNNNNNNNNNaaaaaaaaaaaacctggacAATCCATTCAACAGCCAGGTCAGTGgtacaaattattttgtcaattgcacttttttaattgattaatgtgtatttttaaaatacagttaaggTTCATATACTTTCCAGTCCATAAGATTTGAAGCTGTTATGTTACAGCATTCTGCCACAGgttcatttcaatatatatattttttaatttacctgGTTTTCATTTAAAGGTGTACATTTACCAAACTAGCAGTTAaacctgaaaaagaaacatcccaAAAATAGATATACAGGTTGATATTCATTTACACTGTAGTAGAATAATGTCAATTCCATGAcgattaataatgtaaaacacttGACAAATATTTAAGTATTCTTTCTGCTAATATTGCTATGAGATGAGTAATGAAAAAAACTTTACATTACAACCCTTACATAACtagttcattaaaaaagaaccatgacaaaagacaaacaaaaacgaAAGAGGGATTAAAAATCACTCACTGCACACAAAAAGGTGAAAAAGGTGTGGTTTTAACAAGCTGTAATTCAGTGAATCTGAGCTCTAAGGCTCACAGATATTTGTTTCCACAACAAACTTGTTCTCAAAGTGACGAATTTTGTGGCAGTTCAAGGCTTCGCGTTTCTGAATACCTGCAATAATGGATTCTCTACGTTGCAGCTTGTAAGTGTCCTTGCCACGGCACAGACTGAAAATGAAGTAGCCCAGCTGGTCAACGTTGTCAATGCGTTCGGTAACGACCATTTGCTCGTGGATCAGATATGACTGAGGCAGGTAAGTTCCAGCCTTAGTCATATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87887 lncRNA upstream 108309 15239656 ~ 15242333 (+) False AMCG00014470
TU87814 lncRNA upstream 169822 15179845 ~ 15180820 (+) True G70286
TU87784 lncRNA upstream 882898 14466704 ~ 14467744 (+) True G70271
TU87767 lncRNA upstream 1151334 14197980 ~ 14199308 (+) False AMCG00014456
TU87766 lncRNA upstream 1156209 14193779 ~ 14194433 (+) False AMCG00014456
TU87973 lncRNA downstream 19926 15450778 ~ 15451268 (+) True G70409
TU87977 lncRNA downstream 69706 15500558 ~ 15500832 (+) True G70413
TU87979 lncRNA downstream 74962 15505814 ~ 15506048 (+) True G70415
TU87982 lncRNA downstream 91673 15522525 ~ 15525015 (+) True G70418
TU88084 lncRNA downstream 296582 15727434 ~ 15728917 (+) True G70496
AMCG00014476 mRNA upstream 14421 15332929 ~ 15336221 (+) True AMCG00014476
AMCG00014472 mRNA upstream 63366 15273561 ~ 15287276 (+) True AMCG00014472
AMCG00014471 mRNA upstream 96671 15247771 ~ 15253971 (+) True AMCG00014471
AMCG00014470 mRNA upstream 108336 15221914 ~ 15242306 (+) True AMCG00014470
AMCG00014468 mRNA upstream 171487 15164212 ~ 15179155 (+) True AMCG00014468
AMCG00014486 mRNA downstream 48600 15479452 ~ 15485053 (+) True AMCG00014486
AMCG00014481 mRNA downstream 64373 15495225 ~ 15499833 (+) True AMCG00014481
AMCG00014482 mRNA downstream 87019 15517871 ~ 15522481 (+) True AMCG00014482
AMCG00014488 mRNA downstream 169307 15600159 ~ 15617165 (+) True AMCG00014488
AMCG00014489 mRNA downstream 199338 15630190 ~ 15654845 (+) True AMCG00014489
TU87778 other upstream 993774 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 5341994 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 7934048 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 8001175 7346195 ~ 7349467 (+) True G68830
TU85567 other upstream 10698678 4649200 ~ 4651964 (+) False G68475
TU88057 other downstream 244779 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 244779 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 698673 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 1034829 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 1972659 17403511 ~ 17448453 (+) False AMCG00014553

Expression Profile