RNA id: TU87973


Basic Information

Item Value
RNA id TU87973
length 491
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G70409
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15450778 ~ 15451268 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agttaagggaaattgtggtaacaagtaatgataggatctttttCGGCACCtaaatgtaaatgagactgatatatatgtaacgagaagttaccagacataaataataacctgcgtagttatttaatgtctgactaataatactaacgagagactcaccttcgtcttactaaccggtattgtagtcaatgtgtttataaccttttttgtttaacgatttgtgtgttatcatatgcggtcccatggtctttgatttggtcacggaagtgatttgtctttgatttgttgatctagagttgaattttaattagttttccccttttgtataactagtgtagtgctacatttagtctttgtttttgaataaatttgacaatttatatctttggaattggtgtctgcgtccaattattacagaaattgaattctacaagattccaggattcgtggtaaggtgatactataaattcacttctttaattgaaatttataag

Function

GO:

id name namespace
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87927 lncRNA upstream 19926 15350642 ~ 15430852 (+) True G70378
TU87887 lncRNA upstream 208445 15239656 ~ 15242333 (+) False AMCG00014470
TU87814 lncRNA upstream 269958 15179845 ~ 15180820 (+) True G70286
TU87784 lncRNA upstream 983034 14466704 ~ 14467744 (+) True G70271
TU87767 lncRNA upstream 1251470 14197980 ~ 14199308 (+) False AMCG00014456
TU87977 lncRNA downstream 49290 15500558 ~ 15500832 (+) True G70413
TU87979 lncRNA downstream 54546 15505814 ~ 15506048 (+) True G70415
TU87982 lncRNA downstream 71257 15522525 ~ 15525015 (+) True G70418
TU88084 lncRNA downstream 276166 15727434 ~ 15728917 (+) True G70496
TU88167 lncRNA downstream 467145 15918413 ~ 15918621 (+) True G70562
AMCG00014480 mRNA upstream 79400 15365696 ~ 15371378 (+) True AMCG00014480
AMCG00014476 mRNA upstream 114557 15332929 ~ 15336221 (+) True AMCG00014476
AMCG00014472 mRNA upstream 163502 15273561 ~ 15287276 (+) True AMCG00014472
AMCG00014471 mRNA upstream 196807 15247771 ~ 15253971 (+) True AMCG00014471
AMCG00014470 mRNA upstream 208472 15221914 ~ 15242306 (+) True AMCG00014470
AMCG00014486 mRNA downstream 28184 15479452 ~ 15485053 (+) True AMCG00014486
AMCG00014481 mRNA downstream 43957 15495225 ~ 15499833 (+) True AMCG00014481
AMCG00014482 mRNA downstream 66603 15517871 ~ 15522481 (+) True AMCG00014482
AMCG00014488 mRNA downstream 148891 15600159 ~ 15617165 (+) True AMCG00014488
AMCG00014489 mRNA downstream 178922 15630190 ~ 15654845 (+) True AMCG00014489
TU87778 other upstream 1093910 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 5442130 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 8034184 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 8101311 7346195 ~ 7349467 (+) True G68830
TU85567 other upstream 10798814 4649200 ~ 4651964 (+) False G68475
TU88057 other downstream 224363 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 224363 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 678257 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 1014413 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 1952243 17403511 ~ 17448453 (+) False AMCG00014553

Expression Profile