RNA id: TU87982


Basic Information

Item Value
RNA id TU87982
length 2491
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G70418
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15522525 ~ 15525015 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTTTActgttaaataaagtaatatttgtactatatacattatttacagttGTTAAGGCGATGGTACAAACGaatcatgtttaatacattgaaAGAACGAGTGCTGTATAAACATCTGAAATTCCTAAAAGCCATACTCATTATACACAAAAGCcgtataacaaaatatttaacatactTTATTTATGGTACATCTGACTTTAAACATAAAAAcccattaatacaaaataatattcatttgtaaaaaaacaaacaaaaaaaaaaaaaacagtacaactTGTCATGTTTTATCTACATTAGAGCAAACTAGAATAAAACACCCTACTCAAGATTCAGCAGATAGCATTTGTGTGGTTGATACAAAAATTTGGTAAATGTATGATTAATAGAAATGTGAAATCGTAGTTAAGAAACGTTTGGATTTGATGGTTaccaaaatatgaatacatcaGAATTCCTAGACGTCGCaagaaagtaataaataaactttaaagTGCAGATTACATCAAACATGCTAGCTGCCATAATGTACAGGTTTcaaattatgttaaatatgtaaatcaaCTGCTAGTctacaatgcatttcaaactcAAAGTCTGTACTGTAGTGATTGTACATGTGCTCTGGGTTGTGACGGGGTCTGACATTCATTAAGATATGGCCCATGTGCTTTTAGAGACATGCTGGTCTACCAAAAAAGCCACAGATTAAACTTTCACAACAgcacttatttttatgttttactctTGCACTAGTTCATATGTTGCAATGCAAGTAAATCTCTGTATGTGGGCATATGGACACAGTACTACAGCAAAGGGAGAAGAAGTTGAATTAAACTGGTAATGTTTCAGCTGAGATAGTCCcaggtgatttatttttattattttaagggaAGGTTGGATTTTCTATTGTGATTAGGAAATATTTATCTTCTCATCCACAGCCCATTTGTCACAAACTATAAGCCAAAGAGTTTTTTAAACATTAGGATTAAATATGCAAAGCTGAGGTCTTTAAGGTTTGTCAAAAGCTACTGTAGTGTAACAAAGTTTTGTGGATGTGTTTGGAATTGATCAAGCTTAGAGgcttaaaatgaaatgtctaTCAACACATCTGGACTCTGGACAGTAGCTTAGAAAACGAAGCTCTACTGattactaaaaatgtattttgatctTCAAATTGAAAACCACAAAGATTAACAAAGTCATTCTACAATCGAAACCCTACTTGCACAAACCAACAACACTTTACAGCTCCCTCAGTTGTGACTCCCAAACCCACAGCCTAATACTACTCATtataacattcaaaatatatacacattgatTACCTGTaaacacagacattaaaaataacatcacCTATTTCCTCCCACTTGTAAGCCTTCTATATAGCACTGTTAAGACCATTGCTCTGTACTTTCTGACTTGCACCTGCAAGGCTCAGTTTAGTCTTTTGGCAACTAGCACATCTCTCTGTTTGAATTTGATTCTGCTGCTGAATCTTGAAGTAGTTTTACATTAGGACACCAAGCttaattaatatacatgttCAGAAAACAAGGACAGCCAGAACCCTCCTGTGTCCATCACAAATTCATCCTTTTTTTAGTGTTTTCAAGCAccttttgcaaataaaaaatattcaatGTGCAAGCATCCCTTCACCAACAAATGTgcaatcattttctttcttgcatcaaaaaaaagaattaaactCTTGTCCCATGTTGTGTGTTTAGTCTGTGcaaaagatgcatctttttcAAGCATTTCAATCTGCCATAGTGTCATTTGATTCATTGTAAAAGCACACTAAACACTGGGTAACCAAtcttaattgaaaaacaaagggaatattaagaaattaagtaTCGTGCAGCTTTAcctaattacaaaaaacaaatcaacaaaaacaaaacaagtgacATTCTTTATCCCTAGAAATCTCATAAAAGCAGAttcaatatttcacattttctattaGATTTGGTGTGAAAAAAAATTAGTTATTCCTCATATGTTATGTGATAATACtttggcacatttattttttatttttaatgttatgtcACCCAAAACGAATATACTACAGAAAGTATTTGAATAACTGAGCACATTAAGCTGCTTAGCTATTGGTTGGGTGGACATGTAACCAGAACTAAGAAAAAGTGAAAGTGTGTACAGCTAGACTGCCCTCCTCTGAGTGCGCTTTTCATTCTCGCCAGGTTCAGGCACAGGTGGGAAGCACTAATGCAATAGAAACAGTGCATAACTGTCAGAAACCATAAAGGAAGGGAAAGTGAAGATTACTAGAGAAGAACATAGTCTGACACGTTCTTTGTTCTACTGGATTATCTCAGCCCTCAGACATGACAGCAACAGCTTCTCCCCCTTCACACTGAATTCCCTCAAAGAGCCACTTACTGGTTCACCACAACTGAtattgtacagtgcatccggaaagtattcacagcgcttcact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87979 lncRNA upstream 16477 15505814 ~ 15506048 (+) True G70415
TU87977 lncRNA upstream 21693 15500558 ~ 15500832 (+) True G70413
TU87973 lncRNA upstream 71257 15450778 ~ 15451268 (+) True G70409
TU87927 lncRNA upstream 91673 15350642 ~ 15430852 (+) True G70378
TU87887 lncRNA upstream 280192 15239656 ~ 15242333 (+) False AMCG00014470
TU88084 lncRNA downstream 202419 15727434 ~ 15728917 (+) True G70496
TU88167 lncRNA downstream 393398 15918413 ~ 15918621 (+) True G70562
TU88264 lncRNA downstream 712095 16237110 ~ 16240338 (+) True G70637
TU88391 lncRNA downstream 965396 16490411 ~ 16491118 (+) True G70735
TU88448 lncRNA downstream 1205863 16730878 ~ 16733637 (+) True G70776
AMCG00014482 mRNA upstream 44 15517871 ~ 15522481 (+) True AMCG00014482
AMCG00014481 mRNA upstream 22692 15495225 ~ 15499833 (+) True AMCG00014481
AMCG00014486 mRNA upstream 37472 15479452 ~ 15485053 (+) True AMCG00014486
AMCG00014480 mRNA upstream 151147 15365696 ~ 15371378 (+) True AMCG00014480
AMCG00014476 mRNA upstream 186304 15332929 ~ 15336221 (+) True AMCG00014476
AMCG00014488 mRNA downstream 75144 15600159 ~ 15617165 (+) True AMCG00014488
AMCG00014489 mRNA downstream 105175 15630190 ~ 15654845 (+) True AMCG00014489
AMCG00014487 mRNA downstream 131914 15656929 ~ 15671148 (+) True AMCG00014487
AMCG00014490 mRNA downstream 150768 15675783 ~ 15685899 (+) False AMCG00014490
AMCG00014496 mRNA downstream 175139 15700154 ~ 15703459 (+) True AMCG00014496
TU87778 other upstream 1165657 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 5513877 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 8105931 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 8173058 7346195 ~ 7349467 (+) True G68830
TU85567 other upstream 10870561 4649200 ~ 4651964 (+) False G68475
TU88057 other downstream 150616 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 150616 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 604510 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 940666 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 1878496 17403511 ~ 17448453 (+) False AMCG00014553

Expression Profile