RNA id: TU88084


Basic Information

Item Value
RNA id TU88084
length 1484
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G70496
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15727434 ~ 15728917 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tctatttttgaaagcattcttactttacagcattttttcacatctgcctaaaacgtttgcacagtgcTGTACTTCCAAAGCAGAACTGCTAGGTGGATCGTtcaatgtacaaataaaatacatttttgaaaattatCTGTCAGATTAATAATAGCAGACCACCAAGTCctgaataaaacaagaacaGCCACTCTTAGTGAGTTGTCAGTTGCTGTACTGTAAATAAGATTGTGTTACACTCAGAGTTCATTACATCATTGGTTCAGAGACAAAACATAGAATAGAATTACACTGAGTCACTTCACAGAACTAAGCATAAGGGGAATTAACTGGAATATAATTACCCCAGGTGGATCAGGTTTCACtgtatcaaaacataatataaatcaaAGTGTGCTTCCTTACTTGTGTTCTGTGGCGCCATAGCTGTGTTTTAACATCCCTGTAAGGAGGCAACTCTTTAAACAGTGCTGTTTGTACTAAAGGACAAATGTTCTCAATGAGAGAGAACTATACAGCATTACTGTGAACAGAGCCATTGTGACAACAGTGCAGTGGGCATGACAAATATGTAGCCGTACTTTACAGCACCATTCCGCGGGAGCTCAGCATTAATCTCATTTGCGAGCGCTATACATAATCTTGGAGACACATGGATGACGTTATTGTCAGTGGCAGTAGACTGCATTACTAAATTGGTTAGTCAGCCTAAATTATACAAGTCCTCATTCATACAGGAAGTGCAGAGAGTTTGAAAATGATGACATGGCTGTGTGAAAGAGATGCATCACATAACTATGCGTCTACATAGCTTATGCTTCAGCTTACATACTAGAGAGCCACCTTGGAACACTCTGCCTGTTGAAATCGATAGCTTGCGCTGTGCCCTCTGTTTTAAAGAGAGCACTTTCCAGTAagaacacaaattaacaaaGATACTGTGATTCCCATTTGATGATTTAATGAAGCTTGGGACTTGtaatcttcattttttttttttcttcagaaattcAAAGCTTGGAATGTAGGACTGTGTTGAACACGGCTCAAATACTAcaactacagaaataaataatggcatGCAAGAATTGAATAAATCTATTCTGACGTGAGAACTGACTTGTCTGAGCTGGTATTAATCCTTTGAAGCTCACAGttttacacagacacagcagAGATGCATTTCACCCTCTGCATAAGTTTATGATTCTGGGGAGATCAAAGGTATCTGTGTTTCAGTACAGCTAACTAAGTctccttgaaaaaataaaaatataggaTGGATGCCATTATGTACAGATTTTGTAgatcatgaaaataataatgtcagaCTGTATCGAACAGCTTTTATATAAacctgcaattaaaataattctgtgtAAATTTCTTCTATTATTTGTATCAGTACTGTTTGAATCCCAGAATGGTCTTTTTACAAATGCCAGTAGCATTGTTGGTCTTGTACGTTACATTCTTATTTTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87982 lncRNA upstream 202419 15522525 ~ 15525015 (+) True G70418
TU87979 lncRNA upstream 221386 15505814 ~ 15506048 (+) True G70415
TU87977 lncRNA upstream 226602 15500558 ~ 15500832 (+) True G70413
TU87973 lncRNA upstream 276166 15450778 ~ 15451268 (+) True G70409
TU87927 lncRNA upstream 296582 15350642 ~ 15430852 (+) True G70378
TU88167 lncRNA downstream 189496 15918413 ~ 15918621 (+) True G70562
TU88264 lncRNA downstream 508193 16237110 ~ 16240338 (+) True G70637
TU88391 lncRNA downstream 761494 16490411 ~ 16491118 (+) True G70735
TU88448 lncRNA downstream 1001961 16730878 ~ 16733637 (+) True G70776
TU88522 lncRNA downstream 1300043 17028960 ~ 17097964 (+) True G70835
AMCG00014494 mRNA upstream 1994 15715800 ~ 15725440 (+) True AMCG00014494
AMCG00014496 mRNA upstream 23975 15700154 ~ 15703459 (+) True AMCG00014496
AMCG00014490 mRNA upstream 41535 15675783 ~ 15685899 (+) False AMCG00014490
AMCG00014487 mRNA upstream 56286 15656929 ~ 15671148 (+) True AMCG00014487
AMCG00014489 mRNA upstream 72589 15630190 ~ 15654845 (+) True AMCG00014489
AMCG00014495 mRNA downstream 6728 15735645 ~ 15749118 (+) True AMCG00014495
AMCG00014501 mRNA downstream 51672 15780589 ~ 15781550 (+) True AMCG00014501
AMCG00014500 mRNA downstream 94359 15823276 ~ 15870879 (+) True AMCG00014500
AMCG00014503 mRNA downstream 145666 15874583 ~ 15877671 (+) True AMCG00014503
AMCG00014505 mRNA downstream 156346 15885263 ~ 15903047 (+) True AMCG00014505
TU88057 other upstream 47646 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other upstream 47646 15675631 ~ 15679788 (+) False AMCG00014490
TU87778 other upstream 1370566 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 5718786 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 8310840 7413640 ~ 7416594 (+) True G68848
TU88218 other downstream 400608 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 736764 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 1674594 17403511 ~ 17448453 (+) False AMCG00014553
TU88725 other downstream 2542937 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 7126425 22855342 ~ 22855646 (+) True G71525

Expression Profile