RNA id: TU88167


Basic Information

Item Value
RNA id TU88167
length 209
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G70562
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15918413 ~ 15918621 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attcttctaggtacacttgcacacagtttttgaaggaactcggcaggtaggttggcccaaacatcttggagaactaaccacagctcttctgtggatttaggcagcctcagttgcttctcttgtcatgtaatcccagacagactcgatgatgttgagatcggGGCTCTGTGgagccataccatcacttccaggactccttgttcttcttc

Function

GO:

id name namespace
GO:0006401 RNA catabolic process biological_process
GO:0006402 mRNA catabolic process biological_process
GO:0000956 nuclear-transcribed mRNA catabolic process biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88084 lncRNA upstream 189496 15727434 ~ 15728917 (+) True G70496
TU87982 lncRNA upstream 393398 15522525 ~ 15525015 (+) True G70418
TU87979 lncRNA upstream 412365 15505814 ~ 15506048 (+) True G70415
TU87977 lncRNA upstream 417581 15500558 ~ 15500832 (+) True G70413
TU87973 lncRNA upstream 467145 15450778 ~ 15451268 (+) True G70409
TU88264 lncRNA downstream 318489 16237110 ~ 16240338 (+) True G70637
TU88391 lncRNA downstream 571790 16490411 ~ 16491118 (+) True G70735
TU88448 lncRNA downstream 812257 16730878 ~ 16733637 (+) True G70776
TU88522 lncRNA downstream 1110339 17028960 ~ 17097964 (+) True G70835
TU88535 lncRNA downstream 1213442 17132063 ~ 17173062 (+) True G70846
AMCG00014504 mRNA upstream 1447 15907581 ~ 15916966 (+) True AMCG00014504
AMCG00014505 mRNA upstream 15366 15885263 ~ 15903047 (+) True AMCG00014505
AMCG00014503 mRNA upstream 40742 15874583 ~ 15877671 (+) True AMCG00014503
AMCG00014500 mRNA upstream 47534 15823276 ~ 15870879 (+) True AMCG00014500
AMCG00014501 mRNA upstream 136863 15780589 ~ 15781550 (+) True AMCG00014501
AMCG00014502 mRNA downstream 28959 15947580 ~ 15954701 (+) True AMCG00014502
AMCG00014506 mRNA downstream 89778 16008399 ~ 16036760 (+) True AMCG00014506
AMCG00014508 mRNA downstream 210858 16129479 ~ 16139032 (+) True AMCG00014508
AMCG00014507 mRNA downstream 220852 16139473 ~ 16154656 (+) True AMCG00014507
AMCG00014514 mRNA downstream 246224 16164845 ~ 16189661 (+) True AMCG00014514
TU88057 other upstream 238625 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other upstream 238625 15675631 ~ 15679788 (+) False AMCG00014490
TU87778 other upstream 1561545 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 5909765 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 8501819 7413640 ~ 7416594 (+) True G68848
TU88218 other downstream 210904 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 547060 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 1484890 17403511 ~ 17448453 (+) False AMCG00014553
TU88725 other downstream 2353233 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 6936721 22855342 ~ 22855646 (+) True G71525

Expression Profile