RNA id: TU88264


Basic Information

Item Value
RNA id TU88264
length 3068
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G70637
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16237110 ~ 16240338 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGAAACATATAGCATGCAACTATTGTCACATGCGTTTCCTGaactattgtttttctttgtttctaaaCACTATTTTACAGATTATTCTCTCTGACACTGAGCCCATAGACATGCAAGAGAATTTATTTCTTATgcctaaaataaacatttacaccaCTTAGCAaatttaatctttcatttaaCTGAACAATTCAGAACTATAACAATCCCATTTGAGACCTAAGATAGATAAGTAGTTATTAGTTATGTAGATTTGGTTTAAATCTACTTAGTGGAAGGAAGCACACCTGCAGGGACCAGGTGATCAGAACCCCATCCCCACTAGGAGGAATGGAGAGACGGTGACTGAGGAGACGGAAGGGATGTGAAGCAACACACATTGGGAAGGTGTGGCAGGTAACAGGTATAGGTATTTGGATGGGCTGCAGCGAGTGTGAAGTTGGAACTGTCCActcattaactttattttaaaacattataaaaagaCATGTAAGGAGGATTAAAGCTCACAAGGCAGGGAAATTGCTTGCATGCAATCATGGCACCTGctatgttttatgaaactggACATTGCACAAGCAACAGTGGAAAAGCCAAGGGCTACAATGAATATATTCATGAATATATTCATTTTGCAAAGTAAGATCCTTATAGTTGtgataatttatacattttagttttagcatatgcaatttgtatatttttaattacattaaaagcatACATCAGATTCTGGGTAAGTGACAGTTGATTTACTGCCTATATTAATGAACATATAAAAGACAGGGccaaaacatacagaaaatcCTCACTGCATATAAAATAGGATTTAAATGAACTAATATCCATTACTGGCTAAAAGGATTAGACAGTTGATATTAATATCAGTTAAACCTAAATAGCTTAATACTAAAAAAGTTCATATTAGTATTGTATTAAAGTCATGTTGAAGAGTTAAATTAAGTGCTTTAGATAGGGACTATACATTTGATGCATGTCCTTCATTCCAGGTCTAAAGAACCTGGAATGTTTCAATAGCTTCATTAGTTCACTGGATTGCAGTTCTACACCCATGGCTTTGACTTGACTGAATCtagtaaaacactgaaataaaaaaagatgctCAAGAAATACCCCAGGACATGGAATTTGAACTCTGCATTCAAATATGGCCAGAATATTTGATGTAGTGGAAATCTAAAAATAGTATTTGTAGGTACAGGGCTTCATTGTACTGCACTTCTAAATATGTAAATTCTAAATGCTTTTTATGTATGACCTCAAATggaacaaatgtattatatatatatagatccaTTTATCTGTAATAacactcattttaaaataaaaaccagatGTTCACATAGGAACATGATTTGAGACAAAGATCTTTGTCATTATTATGGGGTCAGAAAAGGAACAAAACCATCAACTTATGAATAGAAGAAAGGACCTCCGAAAGAGGGGTTTAACACAACAGGCTAGAGCAGATCACATTTAAACCCAATTCCACAGGTTACAGATCTGCAACAAGGAGGTTACAGGTTTCCCCATTAGATTGTGCACTGTGAAGGGTATCTGAAGCACTTTCTTTTAAGTGCCCAAACCACCTCCACCCCACCTGTGGAAGAATCTCTATAGTTGGGCTCAGTTAATATTTAAGTGTCAGCATGAGGCTGGACTGAAACATAAATGGACCACTCccatattgaaatgtatgaaattgCAGGTGGCTACTACAGAACACACGGAGACCACCCAAGCCCCTCCCCCTCAGAATGTTTACATAGATCATGAATAATCCATTTACTCTAGTTCACTTTTGTCTTGATAAGAACCAGTAAAAATCACAACTTTGAGTCGTACTAAAGCAACACTTGGATTAAAGCAATGGAGTTTGATCATCAAATCCTAATTATTAGGGAATCAGACAGCTGTGTTCAAATGCTGTTGTTCAGCAGATTGATAAAGGGAAAGCTTTAAAAGCAGAGCGGATGACATGGTAAGGATGTGGGATATAACAGGTTGTCAGTGTAAACATCCAATGTGGTTACCATAGTGATACAGGGTAgttacacatataaataaatggcatgGTTTACACATAATGGGAAATACTATACTGGGTTTAACCTGAGGAATAGAGAATTATGAAACATTCATTGCAGCAAAGAAAAGTATATAGAATTAGGATACCATTCATGATTTCATCCAAGAAATTTAATATAAATCCATCCACAAAAGTTTATGGCACACAAGTATGTCAGTTTATGACAATGCTTATAGCCTAAAAACTTAAGTTCTCTTAAAATCAGGATAATTTACTGCGAGAAGAGAACCATGAAGATCATTCGAACAAAGCTTGATCAAATTTGTGAAGTCAATTCAgtcttattaaatgtgtaattgtatatgatataaataaaattatgctTCAAACTGTGCTTTTAACTGAAGACTGATTAACCACGACCTATGGGAATTTGACTTTTTGATGACGTCAATTTAACTTGACGCAGCCAGTCCAAagtttccaaatatatatatataattatttttttaaacaaaaagttCATGCCGGATTTTCATGCCTTGATGTGACTAGGCCAGAGTGAAAGGCCCTTAAGGCACTGCACTGAGTCAGTGattcaagaaaacaattgttttgctttgaacaCAAAGATTAGTGAAGTTTACATTTTAGCACTTAGGTAAccattttacagatttattcCCTGAGTTGAGACACTTAGGTTATGGCATAATTCCAAATCATATTCCTGCAGACCtgcatatattgtatatataaaaaataggtTTCTATTATTTCCACTGCAGAGTTCTCTGGGTATAAGTACATTAATctacatgcattttaatgcattattttgcagGTAGATCTtgctgaggaaaataaaaacttgccAACTCTGTCAGGTATGTGTTCTTAAATGTCAAGTGGCATTTGACAAAGCCGCACACAGATTACtacttaaatttaaattaatatttgaattagcAGTGCTCTAGACAGGTGGACACAAGAACTGGTTTTACCACAGAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88167 lncRNA upstream 318489 15918413 ~ 15918621 (+) True G70562
TU88084 lncRNA upstream 508193 15727434 ~ 15728917 (+) True G70496
TU87982 lncRNA upstream 712095 15522525 ~ 15525015 (+) True G70418
TU87979 lncRNA upstream 731062 15505814 ~ 15506048 (+) True G70415
TU87977 lncRNA upstream 736278 15500558 ~ 15500832 (+) True G70413
TU88391 lncRNA downstream 250073 16490411 ~ 16491118 (+) True G70735
TU88448 lncRNA downstream 490540 16730878 ~ 16733637 (+) True G70776
TU88522 lncRNA downstream 788622 17028960 ~ 17097964 (+) True G70835
TU88535 lncRNA downstream 891725 17132063 ~ 17173062 (+) True G70846
TU88555 lncRNA downstream 1009981 17250319 ~ 17253671 (+) True G70865
AMCG00014512 mRNA upstream 28970 16191923 ~ 16208140 (+) True AMCG00014512
AMCG00014514 mRNA upstream 47449 16164845 ~ 16189661 (+) True AMCG00014514
AMCG00014507 mRNA upstream 82454 16139473 ~ 16154656 (+) True AMCG00014507
AMCG00014508 mRNA upstream 98078 16129479 ~ 16139032 (+) True AMCG00014508
AMCG00014506 mRNA upstream 200350 16008399 ~ 16036760 (+) True AMCG00014506
AMCG00014513 mRNA downstream 17903 16258241 ~ 16278438 (+) True AMCG00014513
AMCG00014516 mRNA downstream 105696 16346034 ~ 16370627 (+) True AMCG00014516
AMCG00014517 mRNA downstream 131415 16371753 ~ 16373757 (+) True AMCG00014517
AMCG00014524 mRNA downstream 196839 16437177 ~ 16438737 (+) True AMCG00014524
AMCG00014522 mRNA downstream 208325 16448663 ~ 16450651 (+) True AMCG00014522
TU88218 other upstream 104308 16129525 ~ 16132802 (+) False AMCG00014508
TU88057 other upstream 557322 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other upstream 557322 15675631 ~ 15679788 (+) False AMCG00014490
TU87778 other upstream 1880242 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 6228462 10003058 ~ 10008648 (+) True G69406
TU88385 other downstream 225343 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 1163173 17403511 ~ 17448453 (+) False AMCG00014553
TU88725 other downstream 2031516 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 6615004 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 11595165 27835503 ~ 27841871 (+) True AMCG00014704

Expression Profile