RNA id: TU88297


Basic Information

Item Value
RNA id TU88297
length 583
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G70660
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16212544 ~ 16214127 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGCTGTCACGGGAGAAAACTCCACGGcacaccaacccccccccccacaagcATCACAGTCATCAAAAGTGtgctttcgaccacaatttcaAACCCTATtgactgatgtctttcccatagatctaaatgcagataactttagtcactgttcctaatGAAACACTAACCAGTtgagtgtctttgtgactgaagctcctacCATTTGttccccaataatgacccctctttcaaagtaaTCTttatccaaaatcgaggtcaactgggcctgctcagcatttttatacatgccacagagcatgataggatgttaattctTAATtatatcatgcagtacacctgtttggaggcatctgcattcattatgttcctccactcatttattcaggttattcctttaatttggcacctgtatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatataatatacacacacactaccattcaaaagtttgaggtcacttagaaatgtccttgttttccatgaaaacatacatgaaatgagtttgaattggaaatatagcaaaatgaatagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88073 lncRNA downstream 509230 15701495 ~ 15703314 (-) True G70491
TU88074 lncRNA downstream 510208 15700208 ~ 15702336 (-) False G70491
TU88034 lncRNA downstream 567630 15643619 ~ 15644914 (-) True G70458
TU87985 lncRNA downstream 687530 15522520 ~ 15525014 (-) True G70420
TU87990 lncRNA downstream 706033 15506304 ~ 15506511 (-) True G70425
TU88319 lncRNA upstream 67558 16281685 ~ 16281899 (-) True G70679
TU88331 lncRNA upstream 151997 16366124 ~ 16369464 (-) True G70689
TU88386 lncRNA upstream 251652 16465779 ~ 16469228 (-) True G70731
TU88472 lncRNA upstream 507946 16722073 ~ 16723550 (-) False AMCG00014539
TU88566 lncRNA upstream 1070192 17284319 ~ 17284576 (-) True G70876
AMCG00014509 mRNA downstream 48424 16155258 ~ 16164120 (-) True AMCG00014509
AMCG00014510 mRNA downstream 144982 16041233 ~ 16067562 (-) True AMCG00014510
AMCG00014511 mRNA downstream 219388 15973353 ~ 15993156 (-) True AMCG00014511
AMCG00014497 mRNA downstream 461379 15749334 ~ 15751165 (-) True AMCG00014497
AMCG00014498 mRNA downstream 514833 15679795 ~ 15697711 (-) True AMCG00014498
AMCG00014515 mRNA upstream 17438 16231565 ~ 16250776 (-) True AMCG00014515
AMCG00014521 mRNA upstream 86506 16300633 ~ 16307473 (-) True AMCG00014521
AMCG00014520 mRNA upstream 94161 16308288 ~ 16308806 (-) True AMCG00014520
AMCG00014519 mRNA upstream 102407 16316534 ~ 16346355 (-) True AMCG00014519
AMCG00014518 mRNA upstream 161293 16375420 ~ 16376973 (-) True AMCG00014518
TU87063 other downstream 4550051 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 5414397 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 6895377 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 7828320 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 8053954 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 12115612 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 13175163 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 16049040 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 16383335 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 16383335 32597462 ~ 32619149 (-) False G73127

Expression Profile