RNA id: TU88331


Basic Information

Item Value
RNA id TU88331
length 1234
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G70689
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16366124 ~ 16369464 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATTTGGAGACGAGTCgccctttaaaataacaaatgcaaattCCTGGTTGCGTGCCGAGAGACCAGCGGCAGGTCACGGTACACTGCCGACAGACACTGTAAACTGTGTCATGAAGCCATTTTGATAGAGGGTGACGCGCCTGGTCTTCACCTGTGTGTGAATATGAGGGAGAAATCGGGAAGTCACAGGGCTACACTTGCCTATGTCTTTGTTGTTGCTGGCCTCGTACGGTTCGTTGGCTCCCGGCAGGGACTTCAGCTTGGCACTCAACCGCTCTCCCTTGGCACTGGTGCCATGGCTGCTGTGCCCACTGTCTGAGAGACAATGACGACAAGAGATCAAGGTTTCAACagATCCCTGGAGTCTACATTTAATCCTCCCTGGTTCCACAATGCACAGTGTACATACCTCTGACCTGCTCCAGGACAGGGCTGTGTCTACTCTCAGGAAAGACTGCAGACAGAGCAGCAGAAAACAGAGCAAAGGAAGAAGGGATCACAGAAGAGGGCACTTTCATTTCAAGCAGAATGCATTCCTATCCTTGCGTTTTAGAAAGAcactttcagaaataaatgttagAGCTGGCAGCATGCTGGGATTTCTAGAACTAGATTTTCCATTAAGTGATGGCTGAAAATCAAGGGTTGTTAAAGTGAATCATGGGCCACATTATACATTAAACTGGGTATGCATGGATGAGGAAAGAAACATCTGGAAGGAGAAtggggaaacaaattaaaacagagacacagtgaTATTGTTAGTAAACGCAAAGCAAATCTGTATAATATACAGGGTTTCGGAGAGCTCCAAGAAAATGACCGTTTCCAAATGAGAAAACGGTATATGGGCCAAAAAAGGCCCTTACAAGCTGAAGCTGAACGTGGTTATGCCAAGGTGTTGTATAACCTTAGATTTCTACGCCAATCTTTTGTTAGCCTTGCTAGCTGCCTTGGATGTTAGTCTATTCCCATAGGGTTTAATCTCAACCTATAGTCACTCAGTAATCCTTTTGTTAGCACAGAACTGTCCGATTTTTTTCTCGTGGGCCAGTAATCCTGTTGCCACAATCGTGTCATGCTGCCATTTCTGAATAACCATTCTACCTCAATGACTGATTAGGAATGTGCAATATATAAAATTCTGGCACAATTGTAACTTTTTAATTAAGGGATCCTTGATATATAATTTTGTCTGAAAAtcacaatgtatgtattaatccTTAATGAGGCT

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88319 lncRNA downstream 84225 16281685 ~ 16281899 (-) True G70679
TU88297 lncRNA downstream 151997 16212544 ~ 16214127 (-) True G70660
TU88073 lncRNA downstream 662810 15701495 ~ 15703314 (-) True G70491
TU88074 lncRNA downstream 663788 15700208 ~ 15702336 (-) False G70491
TU88034 lncRNA downstream 721210 15643619 ~ 15644914 (-) True G70458
TU88386 lncRNA upstream 96315 16465779 ~ 16469228 (-) True G70731
TU88472 lncRNA upstream 352609 16722073 ~ 16723550 (-) False AMCG00014539
TU88566 lncRNA upstream 914855 17284319 ~ 17284576 (-) True G70876
TU88592 lncRNA upstream 979972 17349436 ~ 17350972 (-) True G70898
TU88625 lncRNA upstream 1077404 17446868 ~ 17448717 (-) False AMCG00014555
AMCG00014519 mRNA downstream 19769 16316534 ~ 16346355 (-) True AMCG00014519
AMCG00014520 mRNA downstream 57318 16308288 ~ 16308806 (-) True AMCG00014520
AMCG00014521 mRNA downstream 58651 16300633 ~ 16307473 (-) True AMCG00014521
AMCG00014515 mRNA downstream 115348 16231565 ~ 16250776 (-) True AMCG00014515
AMCG00014509 mRNA downstream 202004 16155258 ~ 16164120 (-) True AMCG00014509
AMCG00014518 mRNA upstream 5956 16375420 ~ 16376973 (-) True AMCG00014518
AMCG00014528 mRNA upstream 11430 16380894 ~ 16409288 (-) True AMCG00014528
AMCG00014527 mRNA upstream 42272 16411736 ~ 16420491 (-) True AMCG00014527
AMCG00014530 mRNA upstream 55931 16425395 ~ 16431657 (-) True AMCG00014530
AMCG00014526 mRNA upstream 69831 16439295 ~ 16446968 (-) True AMCG00014526
TU87063 other downstream 4703631 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 5567977 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 7048957 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 7981900 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 8207534 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 11960275 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 13019826 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 15893703 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 16227998 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 16227998 32597462 ~ 32619149 (-) False G73127

Expression Profile