RNA id: TU88535


Basic Information

Item Value
RNA id TU88535
length 513
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G70846
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17132063 ~ 17173062 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CggtggggtcttctgctgttgtagcccacccgcctcaaggttgtacgtgttgtggcttcacaaatgctttgctgcatacctcggttgtaacgagtggttatctcagtcaaagttgctcttctatcagcttgaatcagtcggcccattctcctctgacctctagcatcaacaaggcattttcgcccacaggactgccgcatactggatgtttttcccttttcacaccattctttgtaaaccctagaaatggttgtgcgtgaaaatcccagtaactgagcagattgtgaaatactcagaccggcccgtctggcaccaacaaccatgccacgctcaaaattgcttaaatcacctttctttcccattcagacattcagtttggagttcaggagattgtcttgaccaggaccacacccctaaatgcattgaagcaactgccatgtgattggttggttagataattgcattaatgagaaattgaacaggtgttcctaataatcctttagaaatggacaC

Function

GO:

id name namespace
GO:0051402 neuron apoptotic process biological_process
GO:0043523 regulation of neuron apoptotic process biological_process
GO:0070997 neuron death biological_process
GO:1901214 regulation of neuron death biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88522 lncRNA upstream 34099 17028960 ~ 17097964 (+) True G70835
TU88448 lncRNA upstream 398426 16730878 ~ 16733637 (+) True G70776
TU88391 lncRNA upstream 640945 16490411 ~ 16491118 (+) True G70735
TU88264 lncRNA upstream 891725 16237110 ~ 16240338 (+) True G70637
TU88167 lncRNA upstream 1213442 15918413 ~ 15918621 (+) True G70562
TU88555 lncRNA downstream 77257 17250319 ~ 17253671 (+) True G70865
TU88575 lncRNA downstream 143191 17316253 ~ 17317556 (+) True G70883
TU88591 lncRNA downstream 176374 17349436 ~ 17350952 (+) True G70897
TU88599 lncRNA downstream 230449 17403511 ~ 17453367 (+) True AMCG00014553
TU88604 lncRNA downstream 245377 17418439 ~ 17487050 (+) False AMCG00014553
AMCG00014536 mRNA upstream 366511 16737483 ~ 16765552 (+) True AMCG00014536
AMCG00014538 mRNA upstream 400194 16722198 ~ 16731869 (+) True AMCG00014538
AMCG00014537 mRNA upstream 412326 16692012 ~ 16719737 (+) True AMCG00014537
AMCG00014535 mRNA upstream 520402 16583824 ~ 16611661 (+) True AMCG00014535
AMCG00014531 mRNA upstream 553906 16557564 ~ 16578157 (+) True AMCG00014531
AMCG00014552 mRNA downstream 155851 17328913 ~ 17332815 (+) True AMCG00014552
AMCG00014553 mRNA downstream 191736 17364798 ~ 17431231 (+) False AMCG00014553
AMCG00014560 mRNA downstream 606503 17779565 ~ 17780081 (+) True AMCG00014560
AMCG00014565 mRNA downstream 776498 17949560 ~ 18029896 (+) True AMCG00014565
AMCG00014564 mRNA downstream 865046 18038108 ~ 18067182 (+) True AMCG00014564
TU88385 other upstream 662950 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 999261 16129525 ~ 16132802 (+) False AMCG00014508
TU88057 other upstream 1452275 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other upstream 1452275 15675631 ~ 15679788 (+) False AMCG00014490
TU87778 other upstream 2775195 14336858 ~ 14356868 (+) False AMCG00014461
TU88601 other downstream 230449 17403511 ~ 17448453 (+) False AMCG00014553
TU88725 other downstream 1098792 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 5682280 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 10662441 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 10695641 27868703 ~ 27879800 (+) True AMCG00014703

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU82752 True 8484 lncRNA 0.40 1 CI01000012 6197021 ~ 6205504 (+)