RNA id: TU88591


Basic Information

Item Value
RNA id TU88591
length 1517
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G70897
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17349436 ~ 17350952 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGAGACCCAAATGCAAAAGTGGGAGACACACCAGAAGaccaaaatgcaaaatgtgaaaCACACCAGAAGACCTAAATGCAAAAAGGGGAGACACACCAGATGACTCAAATGCAAAAGGGAGAGCCACAGCGGGAGACCCAAATTCAATAACAGAACACTCTTCAAAAAATGAATGTAGAAGATTATTCTAATATTAATCTAGGTGGGTTATCTTTCCTGTagcgttttcttttttgttgtataAAACGATGTTTcacaccttttttgtttaaataatattttgagaaGTGTCTGCAGTGGGGTTACCATGACAATGGAGCACTCCCAATAGTCCTGAATGAAGGGGTTTCCCGagtgttgttttcttgtatttttttcattgttccTTAAATCACTTGCTAAAAAATTGAAAGGCTGTCCAATATTAATTATCCATGTTGAAGAGAGGATCTACGATGGCTATGACTACACTTGTTTGCTTCTGCttaaatattcaatttgaaatgtggAATTCATACATCTAATCAGTCTAATGGGACAAACCTGCTGCAAAGACAATAGTTATATTAATCAAAGTGCTTGATTCATATCTCAATACTGAATGTGAATTTCAGGAAACTCTAATTCTCTTAGAGAATGGAAAACCATGTTATGcccatttccattttcaatgGGGTAGAAATTAATCACCTTACATAATACATAGTAaacataaatatactgtatgttgTGGCACTGTGTGGAGTTGGACACAATGCCAAGGCTAAATGTAGAGGCAGGGTCTATGAAGTAGGAACACACAGGCCAGGATATGGTGAAAGGAGGTGGTATATTTTACACTGAGGAggtgataaaaacaaaaggacataCAAAAAACTATAAACTAAACCCTAGCTCCTTTTTGAGCCTacataaatacttaaaacagGTACCTCTCAAAAAAATGTACCTAATTtaacacaaccaaaacaaaacagcaaccaaGCCAATGTCCATAATCCAAGAATCCAATACAAATTTCAAGTAATATGTTTGTTACCAGTAGATTTCACTGTCTCTTCACTGtcttttctccttctttcccAAGAACAAAAGGTGACAGCTTCTTGATTATTCAGCTCTGGAAAAGATTAAGAGACCACTGGAATTTTTTGTATGGCAgctattccattccattcaaatttttatttggaatttgggagaaatgttttcagtagtttatagaataaaacaaaatgttaatttcacccaaacacatacctataaatagtaaaaccagagaaactgataatttatcaatggtctcttaattttttccagagctgtatatgcagCAGCCGGCCATTGGAGGGAGTCCTGCACATCATGTGCTTACCCCAGAGTGAGCCATAGGCTTCTGGGGGATGTAGTGCCATTCAGGGCAGCCTTTACCTGCCCTGCCCAGTGCTGCATCACAATGTATAGGTAGCAAAGCTTGTTCAATTCATTGATATGTAGAATTTCActgatatgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88575 lncRNA upstream 31880 17316253 ~ 17317556 (+) True G70883
TU88555 lncRNA upstream 95765 17250319 ~ 17253671 (+) True G70865
TU88535 lncRNA upstream 176374 17132063 ~ 17173062 (+) True G70846
TU88522 lncRNA upstream 251472 17028960 ~ 17097964 (+) True G70835
TU88448 lncRNA upstream 615799 16730878 ~ 16733637 (+) True G70776
TU88599 lncRNA downstream 52559 17403511 ~ 17453367 (+) True AMCG00014553
TU88604 lncRNA downstream 67487 17418439 ~ 17487050 (+) False AMCG00014553
TU88613 lncRNA downstream 138874 17489826 ~ 17490607 (+) True G70908
TU88649 lncRNA downstream 299819 17650771 ~ 17651002 (+) True G70938
TU88777 lncRNA downstream 1114267 18465219 ~ 18468335 (+) True G71036
AMCG00014552 mRNA upstream 16621 17328913 ~ 17332815 (+) True AMCG00014552
AMCG00014536 mRNA upstream 583884 16737483 ~ 16765552 (+) True AMCG00014536
AMCG00014538 mRNA upstream 617567 16722198 ~ 16731869 (+) True AMCG00014538
AMCG00014537 mRNA upstream 629699 16692012 ~ 16719737 (+) True AMCG00014537
AMCG00014535 mRNA upstream 737775 16583824 ~ 16611661 (+) True AMCG00014535
AMCG00014553 mRNA downstream 13846 17364798 ~ 17431231 (+) False AMCG00014553
AMCG00014560 mRNA downstream 428613 17779565 ~ 17780081 (+) True AMCG00014560
AMCG00014565 mRNA downstream 598608 17949560 ~ 18029896 (+) True AMCG00014565
AMCG00014564 mRNA downstream 687156 18038108 ~ 18067182 (+) True AMCG00014564
AMCG00014563 mRNA downstream 719582 18070534 ~ 18080340 (+) True AMCG00014563
TU88385 other upstream 880323 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 1216634 16129525 ~ 16132802 (+) False AMCG00014508
TU88057 other upstream 1669648 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other upstream 1669648 15675631 ~ 15679788 (+) False AMCG00014490
TU87778 other upstream 2992568 14336858 ~ 14356868 (+) False AMCG00014461
TU88601 other downstream 52559 17403511 ~ 17448453 (+) False AMCG00014553
TU88725 other downstream 920902 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 5504390 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 10484551 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 10517751 27868703 ~ 27879800 (+) True AMCG00014703

Expression Profile