RNA id: TU88592


Basic Information

Item Value
RNA id TU88592
length 1537
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G70898
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17349436 ~ 17350972 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTGTTTtcaaccattttattttcatatcagTGAAATTCTACATATCAATGAATTGAACAAGCTTTGCTACCTATACATTGTGATGCAGCACTGGGCAGGGCAGGTAAAGGCTGCCCTGAATGGCACTACATCCCCCAGAAGCCTATGGCTCACTCTGGGGTAAGCACATGATGTGCAGGACTCCCTCCAATGGCCGGCTGctgcatatacagctctggaaaaaattaagagaccattgataaattatcagtttctctggttttactatttataggtatgtgtttgggtgaaattaacattttgttttattctataaactactgaaaacatttctcccaaattccaaataaaaatttgaatggaatggaatagcTGCCATACAAAAAATTCCAGTGGTCTCTTAATCTTTTCCAGAGCTGAATAATCAAGAAGCTGTCACCTTTTGTTCTTgggaaagaaggagaaaagaCAGTGAAGAGACAGTGAAATCTACTGGTAACAAACATATTACTTGAAATTTGTATTGGATTCTTGGATTATGGACATTGGCttggttgctgttttgttttggttgtgttaAATTAGGTACATTTTTTTGAGAGGTACctgttttaagtatttatgtAGGCTCAAAAAGGAGCTAGGGTTTAGTTTATAGTTTTTTGtatgtccttttgtttttatcaccTCCTCAGTGTAAAATATACCACCTCCTTTCACCATATCCTGGCCTGTGTGTTCCTACTTCATAGACCCTGCCTCTACATTTAGCCTTGGCATTGTGTCCAACTCCACACAGTGCCAcaacatacagtatatttatgttTACTATGTATTATGTAAGGTGATTAATTTCTACCCcattgaaaatggaaatgggCATAACATGGTTTTCCATTCTCTAAGAGAATTAGAGTTTCCTGAAATTCACATTCAGTATTGAGATATGAATCAAGCACTTTGATTAATATAACTATTGTCTTTGCAGCAGGTTTGTCCCATTAGACTGATTAGATGTATGAATTccacatttcaaattgaatatttaaGCAGAAGCAAACAAGTGTAGTCATAGCCATCGTAGATCCTCTCTTCAACATGGATAATTAATATTGGACAGCCTTTCAATTTTTTAGCAAGTGATTTAAggaacaatgaaaaaaatacaagaaaacaacactCGGGAAACCCCTTCATTCAGGACTATTGGGAGTGCTCCATTGTCATGGTAACCCCACTGCAGACACttctcaaaatattatttaaacaaaaaaggtgtgAAACATCGTTTtatacaacaaaaaagaaaacgctACAGGAAAGATAACCCACCTAGATTAATATTAGAATAATCTTCTACATTCATTTTTTGAAGAGTGTTCTGTTATTGAATTTGGGTCTCCCGCTGTGGCTCTCCCTTTTGCATTTGAGTCATCTGGTGTGTCTCCCCTTTTTGCATTTAGGTCTTCTGGTGTGtttcacattttgcattttggtCTTCTGGTGTGTCTCCCACTTTTGCATTTGGGTCTCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88566 lncRNA downstream 64860 17284319 ~ 17284576 (-) True G70876
TU88472 lncRNA downstream 625886 16722073 ~ 16723550 (-) False AMCG00014539
TU88386 lncRNA downstream 880208 16465779 ~ 16469228 (-) True G70731
TU88331 lncRNA downstream 979972 16366124 ~ 16369464 (-) True G70689
TU88319 lncRNA downstream 1067537 16281685 ~ 16281899 (-) True G70679
TU88625 lncRNA upstream 95896 17446868 ~ 17448717 (-) False AMCG00014555
TU88648 lncRNA upstream 249489 17600461 ~ 17615905 (-) False AMCG00014559
TU88667 lncRNA upstream 652838 18003810 ~ 18004023 (-) True G70954
TU88673 lncRNA upstream 663854 18014826 ~ 18022095 (-) True AMCG00014567
TU88747 lncRNA upstream 978225 18329197 ~ 18331100 (-) True G71016
AMCG00014551 mRNA downstream 25815 17314186 ~ 17323621 (-) True AMCG00014551
AMCG00014549 mRNA downstream 69989 17250290 ~ 17279447 (-) True AMCG00014549
AMCG00014550 mRNA downstream 108362 17170830 ~ 17241074 (-) True AMCG00014550
AMCG00014548 mRNA downstream 222660 17120204 ~ 17126776 (-) True AMCG00014548
AMCG00014547 mRNA downstream 262650 17065669 ~ 17086786 (-) True AMCG00014547
AMCG00014554 mRNA upstream 67485 17418457 ~ 17432186 (-) True AMCG00014554
AMCG00014555 mRNA upstream 96529 17447501 ~ 17462290 (-) True AMCG00014555
AMCG00014556 mRNA upstream 133878 17484850 ~ 17500956 (-) True AMCG00014556
AMCG00014557 mRNA upstream 204695 17555667 ~ 17566646 (-) True AMCG00014557
AMCG00014558 mRNA upstream 221931 17572903 ~ 17582074 (-) True AMCG00014558
TU87063 other downstream 5686943 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 6551289 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 8032269 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 8965212 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 9190846 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 10978767 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 12038318 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 14912195 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 15246490 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 15246490 32597462 ~ 32619149 (-) False G73127

Expression Profile