RNA id: TU88649


Basic Information

Item Value
RNA id TU88649
length 232
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G70938
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17650771 ~ 17651002 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tggagaactgggtgaaagtgttgtggtcagatgagaccaaaatcgagctctttggcatcaactcaactcgccgtgtttggaggaggaggaatgaccccaagaacaccatccccaccgtcaaacatggaggtggaaacattatgctttgggggtgtttttctgctaaggggacaggacaactgcatcGCATCAAaaggacgatggacggggccatgtaccgtcaaatcttggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88613 lncRNA upstream 160164 17489826 ~ 17490607 (+) True G70908
TU88604 lncRNA upstream 163721 17418439 ~ 17487050 (+) False AMCG00014553
TU88599 lncRNA upstream 197404 17403511 ~ 17453367 (+) True AMCG00014553
TU88591 lncRNA upstream 299819 17349436 ~ 17350952 (+) True G70897
TU88575 lncRNA upstream 333215 17316253 ~ 17317556 (+) True G70883
TU88777 lncRNA downstream 814217 18465219 ~ 18468335 (+) True G71036
TU88779 lncRNA downstream 826041 18477043 ~ 18478028 (+) True G71038
TU88954 lncRNA downstream 1037546 18688548 ~ 18692633 (+) True G71136
TU89012 lncRNA downstream 1250223 18901225 ~ 18902161 (+) True G71183
TU89082 lncRNA downstream 1396956 19047958 ~ 19048172 (+) True G71237
AMCG00014553 mRNA upstream 219540 17364798 ~ 17431231 (+) False AMCG00014553
AMCG00014552 mRNA upstream 317956 17328913 ~ 17332815 (+) True AMCG00014552
AMCG00014536 mRNA upstream 885219 16737483 ~ 16765552 (+) True AMCG00014536
AMCG00014538 mRNA upstream 918902 16722198 ~ 16731869 (+) True AMCG00014538
AMCG00014537 mRNA upstream 931034 16692012 ~ 16719737 (+) True AMCG00014537
AMCG00014560 mRNA downstream 128563 17779565 ~ 17780081 (+) True AMCG00014560
AMCG00014565 mRNA downstream 298558 17949560 ~ 18029896 (+) True AMCG00014565
AMCG00014564 mRNA downstream 387106 18038108 ~ 18067182 (+) True AMCG00014564
AMCG00014563 mRNA downstream 419532 18070534 ~ 18080340 (+) True AMCG00014563
AMCG00014569 mRNA downstream 673268 18324270 ~ 18332414 (+) True AMCG00014569
TU88601 other upstream 202318 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 1181658 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 1517969 16129525 ~ 16132802 (+) False AMCG00014508
TU88057 other upstream 1970983 15675631 ~ 15679788 (+) True AMCG00014490
TU88725 other downstream 620852 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 5204340 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 10184501 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 10217701 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 10651371 28302373 ~ 28304073 (+) True G72175

Expression Profile