RNA id: TU88667


Basic Information

Item Value
RNA id TU88667
length 214
lncRNA type intronic
GC content 0.36
exon number 1
gene id G70954
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18003810 ~ 18004023 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGCATACGCATTCCCATGCTTCTTTGGGTTATCTGtagctgtttttaatttaattttaatgtgttcGGGTTCCTAAGCGTTCAGTAAAACATGGCCAGCTGTTAAATATTTGACTTAACctttaacaatatataaatcGAATGGGCCACATAAGTGTACCGCTTGAAAAATTTGGATCGCCTATTTCACAGAGGAATAGGAGGATAAATGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88648 lncRNA downstream 387905 17600461 ~ 17615905 (-) False AMCG00014559
TU88625 lncRNA downstream 555093 17446868 ~ 17448717 (-) False AMCG00014555
TU88592 lncRNA downstream 652838 17349436 ~ 17350972 (-) True G70898
TU88566 lncRNA downstream 719234 17284319 ~ 17284576 (-) True G70876
TU88472 lncRNA downstream 1280260 16722073 ~ 16723550 (-) False AMCG00014539
TU88673 lncRNA upstream 10803 18014826 ~ 18022095 (-) True AMCG00014567
TU88747 lncRNA upstream 325174 18329197 ~ 18331100 (-) True G71016
TU88951 lncRNA upstream 660241 18664264 ~ 18664631 (-) True G71133
TU88975 lncRNA upstream 664778 18668801 ~ 18669655 (-) True G71157
TU88981 lncRNA upstream 682475 18686498 ~ 18687346 (-) True G71160
AMCG00014562 mRNA downstream 68096 17935166 ~ 17935714 (-) True AMCG00014562
AMCG00014561 mRNA downstream 195380 17754964 ~ 17808430 (-) True AMCG00014561
AMCG00014559 mRNA downstream 382659 17589267 ~ 17621151 (-) True AMCG00014559
AMCG00014558 mRNA downstream 421736 17572903 ~ 17582074 (-) True AMCG00014558
AMCG00014557 mRNA downstream 437164 17555667 ~ 17566646 (-) True AMCG00014557
AMCG00014566 mRNA upstream 25818 18029841 ~ 18037569 (-) True AMCG00014566
AMCG00014568 mRNA upstream 110988 18115011 ~ 18179286 (-) True AMCG00014568
AMCG00014571 mRNA upstream 259932 18263955 ~ 18291505 (-) True AMCG00014571
AMCG00014572 mRNA upstream 312831 18316854 ~ 18317264 (-) True AMCG00014572
AMCG00014570 mRNA upstream 314062 18318085 ~ 18323699 (-) True AMCG00014570
TU87063 other downstream 6341317 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 7205663 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 8686643 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 9619586 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 9845220 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 10325716 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 11385267 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 14259144 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 14593439 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 14593439 32597462 ~ 32619149 (-) False G73127

Expression Profile