RNA id: TU88747


Basic Information

Item Value
RNA id TU88747
length 894
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G71016
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18329197 ~ 18331100 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACAATGAGCACTGTTCAGTTTAATATAGGTACCTCAGGAGTAAACTTAAACCCAAGTCACCTTCATCTTAACTGGAAACACAGTCAAgaacacaaatcaaaataaactagtACCagcatattgaaaaaaaaaacttgcatgcTTTCCAAACCCCCGAGGgagattcaaaatgtatattttttaataaaagcatttctgaTTAAACGTGATTGAAGTCAGACCCTATTACTTAGCTTATAGAAATCCAGTCTTTTGTAAAACAtgatacaaacaaatatataaatcacaaaacacacataactgaatcttattttatttctgtcagcAATAACCTCTCAAATTGTTTGGTACTTGTTTAAGCACTGCTTTTAATTGCTAGAAGTGAAACATCCTTTTTGTTGTCAGTGCTGGAGCAGTTCAAATACAGATTAAACTTACCACAGTAATACTGAGCAGCCGTTAGCCAAATAAAACCACAGGATATGTTCAATATttgttaatacagtacaatatatctATATCATTCTTTAATTATGTCTCAGATGTCTCACTAAATTAGATATGGCCAATTCAGGCAGAACCATAGGTGTTATCattcccattttgtttttggtaagGTGGCTACAAACATCATGGTTGAGTCACAAGctttaatagtttttaatttcagtctcCACTACACAATGTAGAAATGTTAATGTCTTAAAACTTGCAGCACTTATGAATGGTTGGCAGTATTTCTTAAGAGTTTATCAAAAGCATAATTGGTGGTAGCGTGCCTTATACTTTGGAAAGAGCCACCACGGTAAACCTCAGCTCCTCAGGATCGCGTGCCATGAACTTCTTACACACCTCTGTAGCatctCTAGAAAAGTATCTTCTGCAGTTTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88673 lncRNA downstream 307102 18014826 ~ 18022095 (-) True AMCG00014567
TU88667 lncRNA downstream 325174 18003810 ~ 18004023 (-) True G70954
TU88648 lncRNA downstream 713292 17600461 ~ 17615905 (-) False AMCG00014559
TU88625 lncRNA downstream 880480 17446868 ~ 17448717 (-) False AMCG00014555
TU88592 lncRNA downstream 978225 17349436 ~ 17350972 (-) True G70898
TU88951 lncRNA upstream 333164 18664264 ~ 18664631 (-) True G71133
TU88975 lncRNA upstream 337701 18668801 ~ 18669655 (-) True G71157
TU88981 lncRNA upstream 355398 18686498 ~ 18687346 (-) True G71160
TU89001 lncRNA upstream 519624 18850724 ~ 18851111 (-) True G71174
TU89007 lncRNA upstream 543505 18874605 ~ 18878253 (-) True G71179
AMCG00014570 mRNA downstream 5498 18318085 ~ 18323699 (-) True AMCG00014570
AMCG00014572 mRNA downstream 11933 18316854 ~ 18317264 (-) True AMCG00014572
AMCG00014571 mRNA downstream 37692 18263955 ~ 18291505 (-) True AMCG00014571
AMCG00014568 mRNA downstream 149911 18115011 ~ 18179286 (-) True AMCG00014568
AMCG00014566 mRNA downstream 291628 18029841 ~ 18037569 (-) True AMCG00014566
AMCG00014578 mRNA upstream 136310 18467410 ~ 18468282 (-) True AMCG00014578
AMCG00014577 mRNA upstream 144443 18475543 ~ 18477922 (-) True AMCG00014577
AMCG00014576 mRNA upstream 154161 18485261 ~ 18487280 (-) True AMCG00014576
AMCG00014579 mRNA upstream 158450 18489550 ~ 18557288 (-) True AMCG00014579
AMCG00014585 mRNA upstream 308712 18639812 ~ 18644670 (-) True AMCG00014585
TU87063 other downstream 6666704 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 7531050 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 9012030 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 9944973 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 10170607 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 9998639 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 11058190 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 13932067 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 14266362 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 14266362 32597462 ~ 32619149 (-) False G73127

Expression Profile