RNA id: TU88777


Basic Information

Item Value
RNA id TU88777
length 3117
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G71036
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18465219 ~ 18468335 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAGACTTTATTTTATGAATCTGAACTAATTTAAGAATGTCAGGAGTACAATGTTCAACACTTTTACAGGTTATTGCAGAGTCAGacagatgtaaaatatatagggcgatacacaaaacaaattggGGGGAAAATGCATTTGGTCAAAGACGCTTTCGAAATTACAAATAGGATGCACTGATATAAAGAATATGTAGGGGATTCCAaaaatattgttctgtttttcccaGTGCCTCTACAGCTTCAGAATcacctgttgtgtttttcaatggTAGTCATGATTTCATTGCAACTGGAAGATATTGTATCTCATTCAGTATGTTTTTGATAAAGGGGCCATGGCTCTCTTCTCTTATCTACCCACTGGCTCTTTTCAGAAGAAAGATTTAAACAATTCAAAGAATACACTGGCGTTTCTTTCCCTGGGACATCATCGGTCTGCCTGTTTCTGGAAAGGGGGCAACAATAAGAGATCAAAGCACTCATTCTAggtcttatttttaattgctcGTCTAGTAGGATTTAAAAACCAGAGCAGTACACAGTGCACTTTGTACTGAAAGCACAATGTGTGAAATCAAAAAATTTACTTATACCTTTTACTTTAGAAACACTTGCAAAGAAGTAATgtttgcaaagaagaaaaaaacaggctgGCTATGTTACTTTAACAGCTGCGGTAGCACAGGAGGAAGTAGCAtatactgtttttaaaactcTGCTACTTTCTCTTCAGATCTTGAAAGGGGAAGTTTGTGTGgctgtacaaatatatattaaagggaGAACATATTAAAGGGGGAGTGGTCATTGtgcatattaatgtgttttaaagtatCGCATTGATATAGAATCTGCAGGGCTTTAATGAGTTCATTTTTGCTTAATTACTATACACTGTAGTTTTAAATTGACAAGACTTACGTTAGCTTTGAGTTGtccaaaacatgtatttcactttttattttttagaaaagcATTGCAGTGCTACTGAAACTACAGCAAGTGCTCATCTCAATCCATTTATTGTACGGaattaagaaaactaaatatggaGGTGATAAATTCACCTATAGCTAAGGAAtttgaaagttttaaaaatatgatatatttttttttttgtcttgttttttcctccaaaaTTTAGTGTCTTTATACTTTTTCTCACAGGTCACCAAACAGCAATTGAACTTGCAATATAAAAGTCATCACAAATACACGCCTatagaaatgttaaaacaacaagCTTTTGTTGTGTGTGCGCAACATTAATTTCCATGTAATACATTGTCTGTCAACCTATATCTAACATGTCTAAAGACAGTTATGCACAAAGCTAGAATAACTATTCCTTCTCATCAAAGCAGATACCAAAATCAGACCTCAGCGCCACAGTGGCTTCAGTATAATAAACCACTGAAACACCCTGCTTTTTTCATTCAATGTGTGcaaactgcagtttaaaataatggttATTGCACCTACTGGATTgataaatcaatgtttaatatcgaactttttgtttttataatatctTTGATAACAAACTTAAATTAATGTGACCTAATAACAGGGCTGTATCTGTGGAGATCATGTACAACTGTCCAAAACTAATAGGATTCAAATTGTGTGGGGCTGCTGTACATGGTTGTACCCTGGCGCATCCTAAACCAACTCCACTGATCATCAAAGTGAcatttgcaaaacatatttaaaagataaagttacatttttcctctcctttcccAAAACTCGAACAATTGGTGCTCATGACTGCAATGGAGTGTGCATATCTTCCAagttgcaatttttttttatttaaataaaatacttcaacaAGAGGACAGTGTCATGTTCTTCTCAAGTCCCCACAATCACGCAGATATTGGAAAACACAACTACAGGAGCTCTGCGATTTAATATAGCCATACAAATCAGCAACAGACAATGCAGTGTAAAGCAATTACACACACAGGACACCCTACATGTCCAATGTCAATCTGCAACACTTTAAACCGGAGTAACTACGtacagagaagggaaaaaagacCATTGACTGTACATTGTTAAAATGTCAGTATAAAAATAGGCGAaaaaccaaccaaaacaaaaaaaagtgcactACTTTAAAAAAAGGGGTGGTTTCGTTGTTTTTTGGTATCACTGGCTCACTTCACTCTCTCAGGCAGGAGTCAGTCTCTGCAGAAAACGTACTCCGTGTAGCTGGTCCAGATCTTGTCCTCGTTGGGGTCGCTGCTGGCGTAGGCGCAGGTGCCCGTGGAGCTGCAGGCCACCATGTGGAAGCCGGCCTCCGTCAGCCGGTCAAACGCCTGCTCCAGGAAGTTATATTTCAGGTAGTACCTGGAGGTGTACCTCTCCGGCGGCCGATCGGGGTCCCGGCTCTCGTTCAGCGTGTCTCCAAACACCTCCTTGGCCAGAGAGGTCTTCCCGCACACCGTGATCCTGGCCACCCTCCTGAACTTGGCATCGGTCTGCGTGTCTCTGCCGATGGTGTAGGAGCCCCTGTATCCGATCGTGATGTAGCCCGACTTTTTGGACTCCAGCGACGGGGAGCGGGGGTTGGCGGTGCCCGCTGGCGTCGCCTGGCGGGAGGGGTCCCAGCCGGCGCCGGAGCCCGCGAACGCCGCCGCCTCGTCCGGGTCGCCGGGGCAGACCTCCTCGCTGAGGGAGTTGTCCTTGCTCACCTTGGGGCTCAGGCGCTGGGACAGGTCGTGCAGCTGGAAGAACTGGGCTTCCCTCTGCAGCCGGCACTTCTCCGGGAAGTAGTCGGGCAACACCAGGTTGAGGTCCCGCAGGTAGTCCAGGATGTAGCGGAACAGAAAGCCGTCCCTGTCCAGAAAGTAGCGCCCTTTGCTGTCCCTCGCCAGCTCCTGCGGGCTCTTCTGGCTGAACATGCTCCACAGCAGCGAGTCCGGCACGGCGACCAGGGTGGTGTGCCGGGTCACGTACACCTGCCCCCCCACATTGAGCTCGATGATCTCCGAGAAAGGGGAGCCGGAGTCCCCGCCGTTAGAGAGCCCACCCGAGGCGTCTGCCAAAGCCATGTCTGCGCGGCTGTGAGCTGCACTCCGGCGGACTGAGGCAGGCAGGTCGGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88649 lncRNA upstream 814217 17650771 ~ 17651002 (+) True G70938
TU88613 lncRNA upstream 974612 17489826 ~ 17490607 (+) True G70908
TU88604 lncRNA upstream 978169 17418439 ~ 17487050 (+) False AMCG00014553
TU88599 lncRNA upstream 1011852 17403511 ~ 17453367 (+) True AMCG00014553
TU88591 lncRNA upstream 1114267 17349436 ~ 17350952 (+) True G70897
TU88779 lncRNA downstream 8708 18477043 ~ 18478028 (+) True G71038
TU88954 lncRNA downstream 220213 18688548 ~ 18692633 (+) True G71136
TU89012 lncRNA downstream 432890 18901225 ~ 18902161 (+) True G71183
TU89082 lncRNA downstream 579623 19047958 ~ 19048172 (+) True G71237
TU89148 lncRNA downstream 749982 19218317 ~ 19222919 (+) True G71283
AMCG00014574 mRNA upstream 69619 18374644 ~ 18395600 (+) True AMCG00014574
AMCG00014569 mRNA upstream 132805 18324270 ~ 18332414 (+) True AMCG00014569
AMCG00014563 mRNA upstream 384879 18070534 ~ 18080340 (+) True AMCG00014563
AMCG00014564 mRNA upstream 398037 18038108 ~ 18067182 (+) True AMCG00014564
AMCG00014565 mRNA upstream 435323 17949560 ~ 18029896 (+) True AMCG00014565
AMCG00014573 mRNA downstream 2216 18470551 ~ 18475184 (+) True AMCG00014573
AMCG00014575 mRNA downstream 10074 18478409 ~ 18480032 (+) True AMCG00014575
AMCG00014583 mRNA downstream 118099 18586434 ~ 18609444 (+) True AMCG00014583
AMCG00014580 mRNA downstream 142225 18610560 ~ 18624589 (+) True AMCG00014580
AMCG00014582 mRNA downstream 158224 18626559 ~ 18632690 (+) True AMCG00014582
TU88725 other upstream 190859 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 1016766 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 1996106 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 2332417 16129525 ~ 16132802 (+) False AMCG00014508
TU88057 other upstream 2785431 15675631 ~ 15679788 (+) True AMCG00014490
TU89430 other downstream 4387007 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 9367168 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 9400368 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 9834038 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 11383115 29851450 ~ 29851821 (+) True G72605

Expression Profile