RNA id: TU89007


Basic Information

Item Value
RNA id TU89007
length 3649
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G71179
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18874605 ~ 18878253 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTATTCTTAGCCACAgataaaacaattaacaacatAGTGCAACTGGAAGCTTATAATCTGGAAACTACACAGCAATTGTACTAGAGGACAAGTTTATTCACTTTTATAACTTACataaattcattacattttttggcaagattatataaatatgcaggaaaaaatatatgtcaGTATACATCTTGTTGGTCAGCTACAATGTGTGATAGGATGAGAATAATACTGCACAAGTAACAAAACTATGTTTAAATTGTTAAGTCATTTATGTATGACACATTCAGTTTGTTAAATAACACTAATAGCAAATTTTTCCAAAGATTGGAATGTACACAAATggtacataaaataaagtgacTAAGTATAAGAGGACTAAACATAAATGCCTCCTGTTAAACATACAGCACAAATAACCCTTCAATTACACTCCACAAGTTTGGAACCAACAGGTAACTATTCTGTGGGATTAGTTTCTACAGTATCTCCACCCAcatgcatattttctttattcaaataattcacATACATCAAAAAAGAAGTTCAAATGGATctgttttaagtaatttaattatcaatgtatttctttagGTCCAGTAATATTCCTTACTGGTTATGTGTTGAATTTGTTTCGTGTTGAAAATCTTGGCTTTTATACTTCAAGAGTGTATATTCCGAATCATGGAAAGGATTACGAAAAAGGATCTCAAGTCACGTAATATGGTGTTTGGATTAAAACTAATGTCCACTAGCTGTGTCAGAATTAAtttaaggaaaatgtaaataataattaaacagaaatcaTTAATTTTCTTCAGATGTAAGTTAAAATAGTAATTGCAGTTAATCAATGGAATATACTGATAAACCATTcatataatacatgttttcttcaccagagtattataaaaatataaatttaatcaTTCTCCTAAAGCAGGTCATTGATTGAAAAAGCATGCTTCACTAAATATATACTAGGTGGAAATGAGCTGCTTTAGCAAAGTCTTCACTTCTTTAAGGCAATTAATATGTTTCCTGCCAGCTAGAAATTGGGTTCACAGATGCAGGCAAATAACTGTTATTCCATTTTAACACTCTGGTGCATATATCACTAAGGAATAACTTCTGACATGAAAAAGGGCTTTTAAAAGCCTTTACATAGCATTATGCATTAACATTCCATCCATGGCGGTTGAGTCTCAGAAATGTTCCATCAAACACAGCCAAGGTCTCTCAAGACTGATATGATGGTTTGCCCAATTTAAACTACATCAGCCTTTATTAAGATACATATCTGTAAATGTCCAGATTCATGGATCAGTtgcgaaaaaataaaaaaacaaaaaacgatttaaattattttgaaacctGCTCTTAATAACATTACATAGATGTGAAAACCCAAATATTCAATATTGAATGTATTAActtgtatttgtacttttggaaaaatactgacctcattttaaacaaactggtTTGAGCATTTTTACCAGCGTAACATCTGACCCTATGGCTACTTGACAATTTCATAATGTGTTGGCTTCAACTCAAGCTATGACACATAGTATTGGGTCAGAAGTCAAAACTGTTCTGTAGATCTCACTGCTGCAGCACATGGACTGAGGCCAATTTACTTCAAATCACACagcaagaaatgtaatacaactgcaaaatgtgttaatttgctTCAGCAAGAAATACAAGTACAAAGATTTCATATTCTTTCTTTGGTTCAAACATCAACATCAGAATTAGGTATGTACATCTCTCACAAATGTTAGTATCCCCTAAATGCATAATATTCTCTAGAAACCAAAAAGTGCATTCTCAGACTATCCATCTACCCCCACTATACTATTTCAACTACAGAATTATATAGGTAAGATTTATGAAGCCATTGCAGTAACCAAACTTAATTTGGCTGCAAAATTCCTGTCCCTCAAGACGGCCTTTTAGAAGTAACTTACTGGAGTGtatgatgacacacaaaacaagtTATGTTAGATGAGTATGAACTCATTGAGGTCTGATGATGCAGACTCTAGTTGTGTCACGACTACTACGGTATTTCTGTATCACTAGAGACCACTTCCAGTGTGACTTGATGGATAAAACACAGTCATAATGGAAATTCTACGCTTGCTGCAGTCTAAGCTTATTCAAATGAAATGATGTAGTGTGTGCACTAATTTAACTATGGCAAAGTTAGACAAACGGTACACAGTGTTTCAGTGCATCTATGGACTACtgcaataatcataatcattccATCATTTTGCAGAAAATGCATTGAATCAACCTTGAATATAGAAATGTACATTCAAGTTAAATTTCTACAGTTTAATTTAACACTACTGATTTGCAGTGTACTAATGGTTGAGATACAGTCTACCCTTCTTAAAGGCCAAGAAAGCATCTCTACGAAATAATTTTACTTCACATGCATTGCCCaagttttgtaaatacattttaatatatatgaatctTGTATTAcgattttaagaatatacaattttcttttcatcctGCCTTTTGTGGTTCATgtaagacaaattaaaggaatggTCTTGATACAGTGAAATCAAATTGCATGCTGTACTTACAGACGTAAGTTACAATCTTGTTTTTGCAGGGCTTTTTCAATAACAAGATCTTTAAAGCATCAGAAAGTGAGGAATAAATACACAGGTTTGTTGTTAAAGAACAGAAGTCAGGATTCTGTGATTTTATCAAGCCAGAAATCTTTGGCTCAGAATGTAATCTATATGTTTACACTGCATGTAGTCCAACCAAATCAATTCTGATTTTGAATATCTGAATAACTTGTGTTTCACTGAAATATGAAATCATTGCAATGCATATGaggtaaacatttgtttttaacttcccagaaatattaattatagTAATCTCAATTGACCTGAAATAAAGAGTTTTTGCTGCACCTTAGATTCACAGAAATACAAAGCTAAATAAAAAGCCTGAGGCTGGTCCCTGACATGTTAAAACCATACTAAGGGGGAGAGTAAGCAATACCAGTGTGTTGATGAATGGCTTACTTAAGCAATGGGGTTTCCCCTGGTGAAAATACTTACTTTTATGGTGCTGCctcaattattttacaataacaaGAACAAGGCATAGATCTATAATGCACAAATGGCcacaaatgtttatataatgatGTAGATATGCAGACGATTATAAAAAAGCACCTTCAGTCACGCGTACGATGCACACACATCACTGAAAGCAAATAGTAGTGGCTACAAAGGCTGCTCCCTCTATGTAAGCACTGTGTAACTGCTGAAGCAATACCAATTAGGACAGAAACAGTCCATTGACTAGGTCTCTACTTTTGGCAAGACGCACATCACTGCTGAGTGAGTGCTCAGTGAGTTAATGTTGAAAGTGTTCATTTCAAGAACTGTTTCACTtcacaattataaaaaaaaaaaaaaaaaaaaaaactgcagacaaaTTGGTATCTCCCAGATCTGCATCTAAGCATACTCTAGCAGCCACTGAAAGAAAGGTTTATGAAAGTGATTGTCTGCCTCCTGCTCCACCTCTTCACAGTACTTTAAGACCGTCTGCAGTAGATCTCCCACCTTCCAATCTCTTTCCTTGGCTCTTTTCAACACTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89001 lncRNA downstream 23494 18850724 ~ 18851111 (-) True G71174
TU88981 lncRNA downstream 187259 18686498 ~ 18687346 (-) True G71160
TU88975 lncRNA downstream 204950 18668801 ~ 18669655 (-) True G71157
TU88951 lncRNA downstream 209974 18664264 ~ 18664631 (-) True G71133
TU88747 lncRNA downstream 543505 18329197 ~ 18331100 (-) True G71016
TU89158 lncRNA upstream 313132 19191385 ~ 19191632 (-) True G71284
TU89162 lncRNA upstream 323550 19201803 ~ 19202950 (-) True AMCG00014604
TU89164 lncRNA upstream 334391 19212644 ~ 19214404 (-) True G71290
TU89165 lncRNA upstream 336361 19214614 ~ 19215246 (-) True G71291
TU89166 lncRNA upstream 337960 19216213 ~ 19217037 (-) True G71292
AMCG00014590 mRNA downstream 96997 18776776 ~ 18777608 (-) True AMCG00014590
AMCG00014589 mRNA downstream 107945 18720805 ~ 18766660 (-) True AMCG00014589
AMCG00014588 mRNA downstream 165196 18696075 ~ 18709409 (-) True AMCG00014588
AMCG00014585 mRNA downstream 229935 18639812 ~ 18644670 (-) True AMCG00014585
AMCG00014579 mRNA downstream 317317 18489550 ~ 18557288 (-) True AMCG00014579
AMCG00014593 mRNA upstream 53884 18932137 ~ 18946921 (-) True AMCG00014593
AMCG00014597 mRNA upstream 93183 18971436 ~ 18999017 (-) True AMCG00014597
AMCG00014601 mRNA upstream 236114 19114367 ~ 19122826 (-) True AMCG00014601
AMCG00014602 mRNA upstream 281676 19159929 ~ 19162787 (-) True AMCG00014602
AMCG00014600 mRNA upstream 296429 19174682 ~ 19184193 (-) True AMCG00014600
TU87063 other downstream 7212112 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 8076458 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 9557438 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 10490381 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 10716015 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 9451486 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 10511037 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 13384914 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 13719209 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 13719209 32597462 ~ 32619149 (-) False G73127

Expression Profile